1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagttctacaattgttgttaataggttgtaattaatgtagtttaattgatgatcaaatacctcttttttcttttagATTCTTGGCAGTGGAATGTCAAATAAGATGTGGGAAAGCCTTGTTGAGCATGCAAAGACTTGTGTCTTAAGTGGAAAGCACTATGTATATTATGCTATTG
species | Oryza sativa |
transcript | LOC_Os02g35470.4 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGAAGATTTTCTCCAGCTTCTTGTCAAGGATCAGCATAGGTTACGGAGT ATTCTTGGCAGTGGAATGTCATATAAGATGTGGGAAAGCCTTGTTGAGCATEST: gi|29628697|gb|CB633708.1|CB633708
genomic: TTGAAGATTTTCTCCAGCTTCTTGTCAAGGATCAGCAGAGGTTACGGAGTgtaagttcta ... tttcttttagATTCTTGGCAGTGGAATGTCAAATAAGATGTGGGAAAGCCTTGTTGAGCAT
EST: TTGAAGATTTTCTCCAGCTTCTTGTCAAGGATCAGCAGAGGTTACGGAGT ATTCTTGGCAGTGGAATGTCAAATAAGATGTGGGAAAGCCTTGTTGAGCATEST: gi|29680200|gb|CB676475.1|CB676475
genomic: TTGAAGATTTTCTCCAGCTTCTTGTCAAGGATCAGCAGAGGTTACGGAGTgtaagttcta ... tttcttttagATTCTTGGCAGTGGAATGTCAAATAAGATGTGGGAAAGCCTTGTTGAGCAT
EST: TTGAAGATTTTCTCCAGCTTCTTGTCAAGGATCAGCAGAGGTTACGGAGT ATTCTTGGCAGTGGAATGTCAAATAAGATGTGGGAAAGCCTTGTTGAGCATEST: gi|66924740|gb|CX111588.1|CX111588
genomic: TTGAAGATTTTCTCCAGCTTCTTGTCAAGGATCAGCAGAGGTTACGGAGTgtaagttcta ... tttcttttagATTCTTGGCAGTGGAATGTCAAATAAGATGTGGGAAAGCCTTGTTGAGCAT
EST: TTGAAGATTTTCTCCAGCTTCTTGTCAAGGATCAGCAGAGGTTACGGAGT ATTCTTGGCAGTGGAATGTCAAATAAGATGTGGGAAAGCCTTGTTGAGCATEST: gi|33796937|gb|CF324332.1|CF324332
genomic: TTGAAGATTTTCTCCAGCTTCTTGTCAAGGATCAGCAGAGGTTACGGAGTgtaagttcta ... tttcttttagATTCTTGGCAGTGGAATGTCAAATAAGATGTGGGAAAGCCTTGTTGAGCAT
EST: TTGAAGATTTTCTCCAGCTTCTTGTCAAGGATCAGCAGAGGTTACGGAGT ATTCTTGGCAGTGGAATGTCAAATAAGATGTGGGAAAGCCTTGTTGAGCATEST: gi|84117303|gb|CD151070.1|CD151070
genomic: TTGAAGATTTTCTCCAGCTTCTTGTCAAGGATCAGCAGAGGTTACGGAGTgtaagttcta ... tttcttttagATTCTTGGCAGTGGAATGTCAAATAAGATGTGGGAAAGCCTTGTTGAGCAT
EST: TTGAAGATTTTCTCCAGCTTCTTGTCAAGGATCAGCAGAGGTTACGGAGT ATTCTTGGCAGTGGAATGTCAAATAAGATGTGGGAAAGCCTTGTTGAGCATEST: gi|33675030|gb|CF303269.1|CF303269
genomic: TTGAAGATTTTCTCCAGCTTCTTGTCAAGGATCAGCAGAGGTTACGGAGTgtaagttcta ... tttcttttagATTCTTGGCAGTGGAATGTCAAATAAGATGTGGGAAAGCCTTGTTGAGCAT
EST: TTGAAGATTTTCTCCAGCTTCTTGTCAAGGATCAGCAGAGGTTACGGAGT ATTCTTGGCAGTGGAATGTCAAATAAGATGTGGGAAAGCCTTGTTGAGCATEST: gi|33380769|gb|CF196112.1|CF196112
genomic: TTGAAGATTTTCTCCAGCTTCTTGTCAAGGATCAGCAGAGGTTACGGAGTgtaagttcta ... tttcttttagATTCTTGGCAGTGGAATGTCAAATAAGATGTGGGAAAGCCTTGTTGAGCAT
EST: TTGAAGATTTTCTCCAGCTTCTTGTCAAGGATCAGCAGAGGTTACGGAGT ATTCTTGGCAGTGGAATGTCAAATAAGATGTGGGAAAGCCTTGTTGAGCAT
genomic: TTGAAGATTTTCTCCAGCTTCTTGTCAAGGATCAGCAGAGGTTACGGAGTgtaagttcta ... tttcttttagATTCTTGGCAGTGGAATGTCAAATAAGATGTGGGAAAGCCTTGTTGAGCAT
taggttgtaattaatgtagtttaattgatgatcaaatacctcttttttcttttagATTCTTGGCAGTGGAATGTCAAATAAGATGTGGGAAAGCCTTGTTGAGCATGCAAAGACTTGTGTCTTAAGTGGAAAGCACTATGTATATTATGCTATTG
tacctcttttttcttt CT-rich tract
taattaatgtagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttctacaattgttgttaataggttgtaattaatgtagtttaattgatgatcaaatacctcttttttcttttagATTCTTGGCAGTGGAATGTCAAATAAGATGTGGGAAAGCCTTGTTGAGCATGCAAAGACTTGTGTCTTAAGTGGAAAGCACTATGTATATTATGCTATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA