1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcagttgtatatttatcgaaaatctttgagcacaatggaccacgttaacagtttactacattacagGTCGATTTCAATTTACCTGAGCGGTTTGACATTACTTATGTCAATTCAAATAGCGAGAAGAAACGGCCTATCATGATTCATAGAGCTATCCTTGGGTCTT
species | Oryza sativa |
transcript | LOC_Os02g33500.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGAAAATTGAGGATGCTCTTGGAAGAAAATGGCAATGTTCCACTGTGCAG GTCGATTTCAATTTACCTGAGCGGTTTGTCATTACTTATGTCAATTCAAATEST: gi|66926591|gb|CX113439.1|CX113439
genomic: TGAAAATTGAGGATGCTCTTGGAAGAAAATGGCAATGTTCCACTGTGCAGgtcagttgta ... tacattacagGTCGATTTCAATTTACCTGAGCGGTTTGACATTACTTATGTCAATTCAAAT
EST: TGAAAATTGAGGATGCTCTTGGAAGAAAATGGCAATGTTCCACTGTGCAG GTCGATTTCAATTTACCTGAGCGGTTTGACATTACTTATGTCAATTCAAATEST: gi|58606455|gb|CK034488.1|CK034488
genomic: TGAAAATTGAGGATGCTCTTGGAAGAAAATGGCAATGTTCCACTGTGCAGgtcagttgta ... tacattacagGTCGATTTCAATTTACCTGAGCGGTTTGACATTACTTATGTCAATTCAAAT
EST: TGAAAATTGAGGATGCTCTTGGAAGAAAATGGCAATGTTCCACTGTGCAG GTCGATTTCAATTTACCTGAGCGGTTTGACATTACTTATGTCAATTCAAATEST: gi|33381931|gb|CF197274.1|CF197274
genomic: TGAAAATTGAGGATGCTCTTGGAAGAAAATGGCAATGTTCCACTGTGCAGgtcagttgta ... tacattacagGTCGATTTCAATTTACCTGAGCGGTTTGACATTACTTATGTCAATTCAAAT
EST: TGAAAATTGAGGATGCTCTTGGAAGAAAATGGCAATGTTCCACTGTGCAG GTCGATTTCAATTTACCTGAGCGGTTTGACATTACTTATGTCAATTCAAATEST: gi|29624983|gb|CB629994.1|CB629994
genomic: TGAAAATTGAGGATGCTCTTGGAAGAAAATGGCAATGTTCCACTGTGCAGgtcagttgta ... tacattacagGTCGATTTCAATTTACCTGAGCGGTTTGACATTACTTATGTCAATTCAAAT
EST: TGAAAATTGAGGATGCTCTTGGAAGAAAATGGCAATGTTCCACTGTGCAG GTCGATTTCAATTTACCTGAGCGGTTTGACATTACTTATGTCAATTCAAATEST: gi|38470874|gb|CF955005.1|CF955005
genomic: TGAAAATTGAGGATGCTCTTGGAAGAAAATGGCAATGTTCCACTGTGCAGgtcagttgta ... tacattacagGTCGATTTCAATTTACCTGAGCGGTTTGACATTACTTATGTCAATTCAAAT
EST: TGAAAATTGAGGATGCTCTAGGAAGAAAATGGCAATGTTCCACTGTGCAG GTCGATTTCAATTTACCTGAGCGGTTTGACATTACTTATGTCAATTCAAAT
genomic: TGAAAATTGAGGATGCTCTTGGAAGAAAATGGCAATGTTCCACTGTGCAGgtcagttgta ... tacattacagGTCGATTTCAATTTACCTGAGCGGTTTGACATTACTTATGTCAATTCAAAT
tttatcgaaaatctttgagcacaatggaccacgttaacagtttactacattacagGTCGATTTCAATTTACCTGAGCGGTTTGACATTACTTATGTCAATTCAAATAGCGAGAAGAAACGGCCTATCATGATTCATAGAGCTATCCTTGGGTCTT
cgttaac putative branch site (score: 14)
aaaatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttgtatatttatcgaaaatctttgagcacaatggaccacgttaacagtttactacattacagGTCGATTTCAATTTACCTGAGCGGTTTGACATTACTTATGTCAATTCAAATAGCGAGAAGAAACGGCCTATCATGATTCATAGAGCTATCCTTGGGTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT