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gtgcatcagcaggatcctccctaaaaattgttatagttatttccactttccatcatccaaagttgataatactgatgaatatttcagTTCTCCTGAGGATACACAATCTGCACAAAGTGACCCCTTCAGTGATATATCTCTCGACATTGAAGACTTGATTATTCCTTGGAGTGAACTTGTTTTGAAA
species | Oryza sativa |
transcript | LOC_Os02g32610.4 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGTGGTGCCCAGTCCAGTGGTCAAGATGGCAATTTTCTTATTCAGAAGAG TTCTCCTGAGGATACACAATCTGCACAAAGTGACCCCTTCAGTGATATATCEST: gi|29675289|gb|CB671564.1|CB671564
genomic: CGTGGTGCCCAGTCCAGTGGTCAAGATGGCAATTTTCTTATTCAGAAGAGgtgcatcagc ... aatatttcagTTCTCCTGAGGATACACAATCTGCACAAAGTGACCCCTTCAGTGATATATC
EST: CGTGGTGCCCAGTCCAGTGGTCAAGATGGCAATTTTCTTATTCAGAAGAG TTCTCCTGAGGATACACAATCTGCACAAAGTGACCCCTTCAGTGATATATCEST: gi|58691963|gb|CK080650.1|CK080650
genomic: CGTGGTGCCCAGTCCAGTGGTCAAGATGGCAATTTTCTTATTCAGAAGAGgtgcatcagc ... aatatttcagTTCTCCTGAGGATACACAATCTGCACAAAGTGACCCCTTCAGTGATATATC
EST: CGTGGTGCCCAGTCCAGTGGTCAAGATGGCAATTTTCTTATTCAGAAGAG TTCTCCTGACGATACACAATCTGCACAAAGTGACCCCTTCAGTGATATATCEST: gi|29664339|gb|CB660614.1|CB660614
genomic: CGTGGTGCCCAGTCCAGTGGTCAAGATGGCAATTTTCTTATTCAGAAGAGgtgcatcagc ... aatatttcagTTCTCCTGAGGATACACAATCTGCACAAAGTGACCCCTTCAGTGATATATC
EST: CGTGGTGCCCAGTCCAGTGGTCAAGATGGCAATTTTCTTATTCAGAAGAG TTCTCCTGAGGATACACAATCTGCACAAAGTGACCCCTTCAGTGATATATC
genomic: CGTGGTGCCCAGTCCAGTGGTCAAGATGGCAATTTTCTTATTCAGAAGAGgtgcatcagc ... aatatttcagTTCTCCTGAGGATACACAATCTGCACAAAGTGACCCCTTCAGTGATATATC
atagttatttccactttccatcatccaaagttgataatactgatgaatatttcagTTCTCCTGAGGATACACAATCTGCACAAAGTGACCCCTTCAGTGATATATCTCTCGACATTGAAGACTTGATTATTCCTTGGAGTGAACTTGTTTTGAAA
tactgat putative branch site (score: 2)
atgaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcatcagcaggatcctccctaaaaattgttatagttatttccactttccatcatccaaagttgataatactgatgaatatttcagTTCTCCTGAGGATACACAATCTGCACAAAGTGACCCCTTCAGTGATATATCTCTCGACATTGAAGACTTGATTATTCCTTGGAGTGAACTTGTTTTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG