1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacttgtttttttccccttcctctggactttggaaaactatctatgttattctgtctctgaaagtgttgtcaatattttccaatgtaaatgcagATTCAAGGGTTCTGTTATGGCTTTGTTGAATTCGAGGAAGCTACTGCAGTCCAAAGTGCTATAGAG
species | Oryza sativa |
transcript | LOC_Os02g29480.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGAAGTTTGGCACCATAAAACCTGATGGGATTCAAGTCAGAAGCCATAAG ATTCAAGGGTTCTGTTATGGCTTTGEST: gi|163928595|gb|EG711168.1|EG711168
genomic: AGAAGTTTGGCACCATAAAACCTGATGGGATTCAAGTCAGAAGCCATAAGgtacttgttt ... gtaaatgcagATTCAAGGGTTCTGTTATGGCTTTG
EST: AGAAGTTTGGCACCATAAAACCTGATGGGATTCAAGTCAGAAGCCATAAG ATTCAAGGGTTCTGTTATGGCTTTGTTGAATTCGAGGAAGCTACTGCAGTCEST: gi|33794831|gb|CF323295.1|CF323295
genomic: AGAAGTTTGGCACCATAAAACCTGATGGGATTCAAGTCAGAAGCCATAAGgtacttgttt ... gtaaatgcagATTCAAGGGTTCTGTTATGGCTTTGTTGAATTCGAGGAAGCTACTGCAGTC
EST: AGAAGTTTGGCACCATAAAACCTGATGGGATTCAAGTCAGAAGCCATAAG ATTCAAGGGTTCTGTTATGGCTTTGTTGAATTCGAGGAAGCTACTGCAGTCEST: gi|218484950|gb|FG946473.1|FG946473
genomic: AGAAGTTTGGCACCATAAAACCTGATGGGATTCAAGTCAGAAGCCATAAGgtacttgttt ... gtaaatgcagATTCAAGGGTTCTGTTATGGCTTTGTTGAATTCGAGGAAGCTACTGCAGTC
EST: AGAAGTTTGGCACCATAAAACCTGATGGGA-TCAAGTCAGAAGCCATAAG ATTCAAGGGTTCTGTTATGGCTTTGTTGAATTCGAGGAAGCTACTGCAGTCEST: gi|87022634|gb|CI293524.1|CI293524
genomic: AGAAGTTTGGCACCATAAAACCTGATGGGATTCAAGTCAGAAGCCATAAGgtacttgttt ... gtaaatgcagATTCAAGGGTTCTGTTATGGCTTTGTTGAATTCGAGGAAGCTACTGCAGTC
EST: AGAAGTTTGGCACCATAAAACCTGATGGGATTCAAGTCAGAAGCCATAAG ATTCAAGGGTTCTGTAATGGCTTTGTTGAATTCGAGGAAGCTACTGCAGTC
genomic: AGAAGTTTGGCACCATAAAACCTGATGGGATTCAAGTCAGAAGCCATAAGgtacttgttt ... gtaaatgcagATTCAAGGGTTCTGTTATGGCTTTGTTGAATTCGAGGAAGCTACTGCAGTC
atctatgttattctgtctctgaaagtgttgtcaatattttccaatgtaaatgcagATTCAAGGGTTCTGTTATGGCTTTGTTGAATTCGAGGAAGCTACTGCAGTCCAAAGTGCTATAGAG
tcaatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttgtttttttccccttcctctggactttggaaaactatctatgttattctgtctctgaaagtgttgtcaatattttccaatgtaaatgcagATTCAAGGGTTCTGTTATGGCTTTGTTGAATTCGAGGAAGCTACTGCAGTCCAAAGTGCTATAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG