1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcaacatgcaatatttagaactggctacaattttaacttttatggactaagcattatccatgcttgtcttgcttaccaattacaacttgtttcagatcagTTTTACCAGCTGAAAGTACCTTGGCTCCTCCATACGATGACTGCGATGAACTATCAACATGATAAAACAAAACAAAGATTACATGATCTTACCTTGATAT
species | Oryza sativa |
transcript | LOC_Os02g15870.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGATATTGCTAAGACGGCAAATAGACCTATGATTCACATTGGTGGCTGAGATCAGEST: gi|88483054|gb|CI420325.1|CI420325
genomic: TGATATTGCTAAGACGGCAAATAGACCTATGATTCACATTGGTGGCT--G---AGgtatcttctt ... ttcaga
EST: TGATATTGCTAAGACGGCAAATAGACCTATGATTCACATTGGTGGCTGAGATCAGEST: gi|88529807|gb|CI458153.1|CI458153
genomic: TGATATTGCTAAGACGGCAAATAGACCTATGATTCACATTGGTGGCT--G---AGgtatcttctt ... ttcaga
EST: TGATATTGCTAAGACGGCAAATAGACCTATGATTCACATTGGTGGCTGAGATCAGEST: gi|58655382|gb|CK044062.1|CK044062
genomic: TGATATTGCTAAGACGGCAAATAGACCTATGATTCACATTGGTGGCT--G---AGgtatcttctt ... ttcaga
EST: TGATATTGCTAAGACGGCAAATAGACCTATGATTCACATTGGTGGCTGAG TTTTACCAGCTGAAAGTACCTTGGCTCCTCCATACGATGACTGCGATGAACEST: gi|86859612|gb|CI299827.1|CI299827
genomic: TGATATTGCTAAGACGGCAAATAGACCTATGATTCACATTGGTGGCTGAGgtatcttctt ... ttcagatcagTTTTACCAGCTGAAAGTACCTTGGCTCCTCCATACGATGACTGCGATGAAC
EST: TGATATTGCTAAGACGGCAAATAGACCTATGATTCACATTGGTGGCTGAGATCAGEST: gi|88514136|gb|CI441642.1|CI441642
genomic: TGATATTGCTAAGACGGCAAATAGACCTATGATTCACATTGGTGGCT--G---AGgtatcttctt ... ttcaga
EST: TGATATTGCTAAGACGGCAAATAGACCTATGATTCACATTGGTGGCTGAGATCAG
genomic: TGATATTGCTAAGACGGCAAATAGACCTATGATTCACATTGGTGGCT--G---AGgtatcttctt ... ttcaga
actaagcattatccatgcttgtcttgcttaccaattacaacttgtttcagatcagTTTTACCAGCTGAAAGTACCTTGGCTCCTCCATACGATGACTGCGATGAACTATCAACATGATAAAACAAAACAAAGATTACATGATCTTACCTTGATAT
tgcttac putative branch site (score: 8)
cttgtttc putative PPT
aattacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaacatgcaatatttagaactggctacaattttaacttttatggactaagcattatccatgcttgtcttgcttaccaattacaacttgtttcagatcagTTTTACCAGCTGAAAGTACCTTGGCTCCTCCATACGATGACTGCGATGAACTATCAACATGATAAAACAAAACAAAGATTACATGATCTTACCTTGATAT
- -acatgca
- - - - - - - - - - -tggctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -atccatg