1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttccctgtggtacagtaatattgacctgcgactgagtttgtgtatgttctattctccaagagtcaagctgcttaacataattgtcttcctaactgtgcagGTTACAGAAGAAGATGTAAAGATTTTCTTTCAGCAGCTTTGTGGGAAG
species | Oryza sativa |
transcript | LOC_Os02g14760.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAAAGAGATGGTCTCAAGGACTGTATATTGTACTAACATAGATAAGAAG GTTACAGAAGAAGATGTAAAGATTTTCTTTCAGCAGCTTTGTGGGAAGEST: gi|58681741|gb|CK070428.1|CK070428
genomic: AAAAAGAGATGGTCTCAAGGACTGTATATTGTACTAACATAGATAAGAAGgtacgtgagt ... aactgtgcagGTTACAGAAGAAGATGTAAAGATTTTCTTTCAGCAGCTTTGTGGGAAG
EST: AAAAAGAGATGGTCTCAAGGACTGTATATTGTACTAACATAGATAAGAAG GTTACAGAAGAAGATGTAAAGATTTTCTTTCAGCAGCTTTGTGGGAAGEST: gi|58594687|gb|CF992995.1|CF992995
genomic: AAAAAGAGATGGTCTCAAGGACTGTATATTGTACTAACATAGATAAGAAGgtacgtgagt ... aactgtgcagGTTACAGAAGAAGATGTAAAGATTTTCTTTCAGCAGCTTTGTGGGAAG
EST: AAAAAGAGATGGTCTCAAGGACTGTATATTGTACTAACATAGATCAGAAG GTTACAGAAGAAGATGTAAAGATTTTCTTTCAGCAGCTTTGGGGGAAG
genomic: AAAAAGAGATGGTCTCAAGGACTGTATATTGTACTAACATAGATAAGAAGgtacgtgagt ... aactgtgcagGTTACAGAAGAAGATGTAAAGATTTTCTTTCAGCAGCTTTGTGGGAAG
gttctattctccaagagtcaagctgcttaacataattgtcttcctaactgtgcagGTTACAGAAGAAGATGTAAAGATTTTCTTTCAGCAGCTTTGTGGGAAG
tcctaac putative branch site (score: 1)
tcttccta CT-rich tract
ttaacataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccctgtggtacagtaatattgacctgcgactgagtttgtgtatgttctattctccaagagtcaagctgcttaacataattgtcttcctaactgtgcagGTTACAGAAGAAGATGTAAAGATTTTCTTTCAGCAGCTTTGTGGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT