1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtagcatgtcctttcgtttagctcctgcgctttgtacagtttggaacagctaactatgggctcacatttctttttcactactgtgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATGCTAATATGGCTGATGCTTCAGAGGAAACTGAAAAGATGGAGACAGATG
species | Oryza sativa |
transcript | LOC_Os02g13990.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAACG GCACTGAGCACTGGCCAAEST: gi|88201604|gb|CI201959.1|CI201959
genomic: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAA
EST: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG GCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATEST: gi|86500192|gb|CI142825.1|CI142825
genomic: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
EST: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG GCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATEST: gi|86545114|gb|CI185320.1|CI185320
genomic: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
EST: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG GCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATEST: gi|88227188|gb|CI228301.1|CI228301
genomic: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
EST: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG GCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATEST: gi|86500747|gb|CI143380.1|CI143380
genomic: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
EST: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG GCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATEST: gi|86421117|gb|CI057106.1|CI057106
genomic: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
EST: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG GCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATEST: gi|88223253|gb|CI223102.1|CI223102
genomic: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
EST: AAGGCTTGAAAAG GCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATEST: gi|86536011|gb|CI176217.1|CI176217
genomic: AAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
EST: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG GCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATEST: gi|86503360|gb|CI145993.1|CI145993
genomic: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
EST: TGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCCAAGGCTTGAAAAG GCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATEST: gi|88225868|gb|CI225784.1|CI225784
genomic: TGCCATTGTGAATTCTCAGACACTTGAGGAGGTTG-CAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
EST: TGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG GCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATEST: gi|5005007|gb|AU068324.1|AU068324
genomic: TGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
EST: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG GCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATEST: gi|88223197|gb|CI223046.1|CI223046
genomic: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
EST: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG GCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATEST: gi|88830705|gb|CI078149.1|CI078149
genomic: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
EST: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG ACACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATEST: gi|88252358|gb|CI350786.1|CI350786
genomic: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
EST: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG GCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATEST: gi|86505850|gb|CI148483.1|CI148483
genomic: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
EST: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG GCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATEST: gi|88460872|gb|CI553008.1|CI553008
genomic: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
EST: GAGGAGGTTGCAAGGCTTGAAAAG GCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATEST: gi|29663404|gb|CB659679.1|CB659679
genomic: GAGGAGGTTGCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
EST: CTGCCATTGTGAATTCTCAGACACTTGANGAGGTTGCAAGGCTTGAAAAG GCACTGAGCACTGGCCAAATTCCTGCTGAATTTGEST: gi|86541745|gb|CI181951.1|CI181951
genomic: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTG
EST: CCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG GCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATEST: gi|86496623|gb|CI139256.1|CI139256
genomic: CCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
EST: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG GCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATEST: gi|86540436|gb|CI180642.1|CI180642
genomic: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
EST: GCAAGGCTTGAAAAG GCACTGAGCACTGGTCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATEST: gi|86500143|gb|CI142776.1|CI142776
genomic: GCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
EST: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG GCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATEST: gi|29663405|gb|CB659680.1|CB659680
genomic: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
EST: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG GCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
genomic: CTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGgtagcatgtc ... tgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGAT
gtttggaacagctaactatgggctcacatttctttttcactactgtgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATGCTAATATGGCTGATGCTTCAGAGGAAACTGAAAAGATGGAGACAGATG
atttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcatgtcctttcgtttagctcctgcgctttgtacagtttggaacagctaactatgggctcacatttctttttcactactgtgatgattagGCACTGAGCACTGGCCAAATTCCTGCTGAATTTGCAATCCCCAAGCCAGATGCTAATATGGCTGATGCTTCAGAGGAAACTGAAAAGATGGAGACAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
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