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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatacctcattttcctctccttttcattttgcttattcttactcttcatgtgcacttgctcatgcacctgagagtatatcatatcttcattttccccaagacccgagagggttggcaggcaaggggtgaactgttaactcgttcataacatctagcatttgaccacagTGATATTTCATCCAATAACTTCAGTGGTTCATTACCACCTTCTCTGGGAAGCCTGTCATCATTGACTACATT

Basic information

species Oryza sativa
transcript LOC_Os02g07960.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g07960.3 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G020986_T01 (Zea mays), 3'ss of exon 6
gtaagatacctcattttcctctccttttcattttgcttattcttactcttcatgtgcacttgctcatgcacctgagagtatatcatatcttcattttccccaagacccgagagggttggcaggcaaggggtgaactgttaactcgttcataacatctagcatttgaccacagTGATATTTCATCCAATAACTTCAGTGGTTCATTACCACCTTCTCTGGGAAGCCTGTCATCATTGACTACATT
                                                                                     ||| |||    |||      |||           || ||||              |||  || || | ||||  | ||||| |||||||||||||| ||||| |||||||||||| |||||||||||||  |||||||| || ||||| ||||||||||
------------------------------------------------------------------------------------gtatgttctccctccttccttccctcccaccccttcatgcaa--------------actgcttgatgatatctgacctttgatcacagTGATATTTCTTCCAACAACTTCAGTGGTCCATTACCACCTTCATTGGGAAGCTTGACATCACTGACTACATT

upper sequence: LOC_Os02g07960.3 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G335638_T01 (Zea mays), 3'ss of exon 6
gtaagatacctcattttcctctccttttcattttgcttattcttactcttcatgtgcacttgctcatgcacctgagagtatatcatatcttcattttccccaagacccgagagggttggcaggcaaggggtgaactgttaactcgttcataacatctagcatttgaccacagTGATATTTCATCCAATAACTTCAGTGGTTCATTACCACCTTCTCTGGGAAGCCTGTCATCATTGACTACATT
                                                                             |||| |  |  || | |  | ||    | || |         || ||||              ||   || ||  || ||  | ||||  ||||| |||||||| ||||| |||||||||||| |||||||||||||  |||||||| || ||||| ||||||||||
-----------------------------------------------------------------------------gtatgttctccctccctccttcc----atcccac--------catgcaa--------------accgcttgatggcacctgacctttgttcacagGGATATTTCTTCCAACAACTTCAGTGGTCCATTACCACCTTCATTGGGAAGCTTGACATCACTGACTACATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcaggcaaggggtgaactgttaactcgttcataacatctagcatttgaccacagTGATATTTCATCCAATAACTTCAGTGGTTCATTACCACCTTCTCTGGGAAGCCTGTCATCATTGACTACATT
                            ttcataa  TA-rich tract