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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaacagaaatttcttgagtctccttcacccgcttgtatgttgccattggcgccttatatatgttactcaatacatgaaacccaaattctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAGAGGCTTCTCCAGGAGGCGTACCAAAGGGGTAGCGCCGATAACATCACCG

Basic information

species Oryza sativa
transcript LOC_Os02g05630.3
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g05630.3 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM5G829894_T03 (Zea mays), 3'ss of exon 2
gtaacaacagaaatttcttgagtctccttcacccgcttgtatgttgccattggcgccttatatatgttactcaatacatgaaacccaaattctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAGAGGCTTCTCCAGGAGGCGTACCAAAGGGGTAGCGCCGATAACATCACCG
            |  |   ||   | ||  |     |  |    ||| |||||     | | | ||| ||||  ||| |||  |   |  | | ||||||||||||||||| |||||| | |||||||||||| ||| |  | ||||| || | ||||||| | || |||| || |||||| ||| | |||||||||||||
----------gtacctacagatattgctaaatatattcattcagtgcaattgg-----tctgtctgtcactct-tacctga--cgttatgtatttttccagGAAGCTGTTGCCATGGTCAAGCCTATTCAGGACCCCCAGGAAGCAGCAAACAAGCTTCTCGAAGAAGCGTCCCGAAGGGGAAGCTCTGATAACATCACCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27577937|gb|CB000632.1|CB000632
EST:     AGTTCCTCATCCTTGCTAACGATGGACTTTGGGATGTTGTAAGTAACAAG                         GCAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACACGCAGCGAA
genomic: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacag ... ctatttccagG-AAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAA
EST: gi|27576293|gb|CA998987.1|CA998987
EST:     AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAG                         GAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
genomic: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacag ... ctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
EST: gi|3767442|gb|AU031552.1|AU031552
EST:     AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAG                         GAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
genomic: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacag ... ctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattggcgccttatatatgttactcaatacatgaaacccaaattctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAGAGGCTTCTCCAGGAGGCGTACCAAAGGGGTAGCGCCGATAACATCACCG
                                           ttctatttcc  CT-rich tract
           ttatatatgttact  TA-rich tract