1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taaaaatataattattttaaaaaaatgtttaaagttgtatgggagattgatctttgctgggcctatcgtgaactgaaaatgtatgaaataaaaattgtagGATGAGGCACAAGAAGGATTGGACGGATCGTACAAGGAGCTATACCTCAAGGAGAACCCGGGGCTCGCCGCTGGCGAGGCGGAGGAGCACGTGCGGCGGC
species | Oryza sativa |
transcript | LOC_Os02g02930.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCTGCCCAGCAAAAATCTTGAGACTCTGGGATGACCTGGGCAGTGCCAAG GATGAGGCACAAGAAGGATTGGACGGATCGTACAAGGAGCTATACCTCAAGEST: gi|58592252|gb|CF990560.1|CF990560
genomic: CCTGCCCAGCAAAAATCTTGAGACTCTGGGATGACCTGGGCAGTGCCAAGgtcaatacct ... aaaattgtagGATGAGGCACAAGAAGGATTGGACGGATCGTACAAGGAGCTATACCTCAAG
EST: CGTGCCCAGCAAAAATCTTGAGACTCTGGGATGACCTGGGCAGTGCCAAG GATGAGGCACAAGAAGGATTGGACGGATCGTACAAGGAGCTATACCTCAAGEST: gi|88225178|gb|CI225094.1|CI225094
genomic: C-TGCCCAGCAAAAATCTTGAGACTCTGGGATGACCTGGGCAGTGCCAAGgtcaatacct ... aaaattgtagGATGAGGCACAAGAAGGATTGGACGGATCGTACAAGGAGCTATACCTCAAG
EST: CCTGCCCAGCAAAAATCTTGAGACTCTGGGATGACCTGGGCAGTGCCAAG GATGAGGCACAAGAAGGATTGGACGGATCGTACAAGGAGCTATACCTCAAGEST: gi|38473176|gb|CF957308.1|CF957308
genomic: CCTGCCCAGCAAAAATCTTGAGACTCTGGGATGACCTGGGCAGTGCCAAGgtcaatacct ... aaaattgtagGATGAGGCACAAGAAGGATTGGACGGATCGTACAAGGAGCTATACCTCAAG
EST: CCTGCCCAGCAAAAATCTTGAGACTCTGGGATGACCTGGGCAGTGCCAAG GATGAGGCACAAGAAGGATTGGACGGATCGTACAAGGAGCTATACCTCAAG
genomic: CCTGCCCAGCAAAAATCTTGAGACTCTGGGATGACCTGGGCAGTGCCAAGgtcaatacct ... aaaattgtagGATGAGGCACAAGAAGGATTGGACGGATCGTACAAGGAGCTATACCTCAAG
attgatctttgctgggcctatcgtgaactgaaaatgtatgaaataaaaattgtagGATGAGGCACAAGAAGGATTGGACGGATCGTACAAGGAGCTATACCTCAAGGAGAACCCGGGGCTCGCCGCTGGCGAGGCGGAGGAGCACGTGCGGCGGC
gattgat putative branch site (score: 4)
aaaatgtatgaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaaatataattattttaaaaaaatgtttaaagttgtatgggagattgatctttgctgggcctatcgtgaactgaaaatgtatgaaataaaaattgtagGATGAGGCACAAGAAGGATTGGACGGATCGTACAAGGAGCTATACCTCAAGGAGAACCCGGGGCTCGCCGCTGGCGAGGCGGAGGAGCACGTGCGGCGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
-aaaaata
- - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - ttgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtatg