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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctcattgttgtttctatatttgcattgatattaagagactttcactgcatagattttgagtagtacctttctattcacacttaattgtcatctctgcagCTTTTTCACAAACACACTAATTCTTCCTATAGTCAACGGACCGACTGAAGGCCTTATGCTAATCTATTTGTGCCATTTTTTCACCTTCTTCACAG

Basic information

species Oryza sativa
transcript LOC_Os02g02750.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g02750.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G466281_T02 (Zea mays), 3'ss of exon 7
gctcattgttgtttctatatttgcattgatattaagagactttcactgcatagattttgagtagtacctttcta--ttcacacttaattgtcatctctgcagCTTTTTCACAAACACACTAATTCTTCCTATAGTCAACGGACCGACTGAAGGCCTTATGCTAATCTATTTGTGCCATTTTTTCACCTTCTTCACAG
   |||| |  | | ||| ||  ||||    ||   |   |||      ||   || |   |    ||| | ||  ||||  ||| |||||  ||| ||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||
atacattttgttgtttatcttgacattttcttttctattttttgttgaaatgatttcttgttttctcctgtataacttcatgcttcattgt--tctgtgcagCTTTTTTACAAATACACTTATTCTTCCTATAGTCAACGGACCAACTGAAGGCCTTATGCTGATCTACTTGTGCCATTTTTTCACCTTTTTCACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|2431249|gb|C73669.1|C73669
EST:     TGGTATTGGTTCATTGCTGCTGTCCCATTTTACTGCGCAACCTGGGAACA                         CTTTTTCACAAACACACTAATTCTTCCTATAGTCAACGGACCGACTGAAGG
genomic: TGGTATTGGTTCATTGCTGCTGTCCCATTTTACTGCGCAACCTGGGAACAgtgagttcat ... atctctgcagCTTTTTCACAAACACACTAATTCTTCCTATAGTCAACGGACCGACTGAAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcatagattttgagtagtacctttctattcacacttaattgtcatctctgcagCTTTTTCACAAACACACTAATTCTTCCTATAGTCAACGGACCGACTGAAGGCCTTATGCTAATCTATTTGTGCCATTTTTTCACCTTCTTCACAG
                                  acttaat  putative branch site (score: 4)
                                           tcatctct  putative PPT
     tagatttt  TA-rich tract