1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...caatgtccaattgtcaacctttacttgtttggacttaaaatattaataacagggaattcatgagacgcattactcacaatatgattttcccttttggcagGGTGAAGTTAATTATTGAAGAGATTGAAAAGGAAGAGGCCCTTCTACTAGACGATCTTGCTTCGATGGATAGAAAATTTGCCGAACACTATAAT
species | Oryza sativa |
transcript | LOC_Os02g02690.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGACTTCCAGAAAG GGTGAAGTTAATTATTGAAGAGATTGAAAAGGAAGAGGCCCTTCTACTAGAEST: gi|163927577|gb|EG710741.1|EG710741
genomic: AGACTTCCAGAAAGgtgaaatttc ... cttttggcagGGTGAAGTTAATTATTGAAGAGATTGAAAAGGAAGAGGCCCTTCTACTAGA
EST: ATTCATCATCCATTAGTCAGATTTCAAGTGCCAGACTTCCAGAAAG GGTGAAGTTAATTATTGAAGAGATTGAAAAGGAAGAGEST: gi|396941424|gb|HO188633.1|HO188633
genomic: ATTCATCATCCATTAGTCAGATTTCAAGTGCCAGACTTCCAGAAAGgtgaaatttc ... cttttggcagGGTGAAGTTAATTATTGAAGAGATTGAAAAGGAAGAG
EST: ATTCATCATCCATTAGTCAGATTTCAAGTGCCAGACTTCCAGAAAG GGTGAAGTTAATTATTGAAGAGATTGAAAAGGAAGAGGCCCTTCTACTAGAEST: gi|86502560|gb|CI145193.1|CI145193
genomic: ATTCATCATCCATTAGTCAGATTTCAAGTGCCAGACTTCCAGAAAGgtgaaatttc ... cttttggcagGGTGAAGTTAATTATTGAAGAGATTGAAAAGGAAGAGGCCCTTCTACTAGA
EST: ATTCATCATCCATTAGTCAGATTTCAAG-GCCAGACTTCCAGAAAG G-TGAAGT-AATTATTG
genomic: ATTCATCATCCATTAGTCAGATTTCAAGTGCCAGACTTCCAGAAAGgtgaaatttc ... cttttggcagGGTGAAGTTAATTATTG
ataacagggaattcatgagacgcattactcacaatatgattttcccttttggcagGGTGAAGTTAATTATTGAAGAGATTGAAAAGGAAGAGGCCCTTCTACTAGACGATCTTGCTTCGATGGATAGAAAATTTGCCGAACACTATAAT
tactcac putative branch site (score: 19)
tgattttccctttt putative PPT
aatatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatgtccaattgtcaacctttacttgtttggacttaaaatattaataacagggaattcatgagacgcattactcacaatatgattttcccttttggcagGGTGAAGTTAATTATTGAAGAGATTGAAAAGGAAGAGGCCCTTCTACTAGACGATCTTGCTTCGATGGATAGAAAATTTGCCGAACACTATAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - ttgtttg
- - - - - - - - - - - - - - - - - - - - - - aataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -attcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaata