1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtcagccatctctctcatcgtctcttctttctttcttcattctaattattaagatgttgattaattatgcaaataaatgcttgtgcatatatatatatatgtatgtggcagATTAGTCTGCACCCTGTGTTGGACAAGACCACTTACCATCTGATAAACCCGGAAAGGCTGGCCATCATGAAGAAG
species | Oryza sativa |
transcript | LOC_Os02g01150.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATGGAAGAGAGCCGCCACCATGGAGGATGTCCTCAGGGAGGCCGACGTG ATTAGTCTGCACCCTGTGTTGGACAAGACCACTTACCATCTGATAAACCCGEST: gi|29682997|gb|CB679272.1|CB679272
genomic: CATGGAAGAGAGCCGCCACCATGGAGGATGTCCTCAGGGAGGCCGACGTGgtcagccatc ... tatgtggcagATTAGTCTGCACCCTGTGTTGGACAAGACCACTTACCATCTGATAAACCCG
EST: CATGGAAGAGAGCCGCCACCATGGAGGATGTCCTCACGGAGGCCGACGTG ATTAGTCTGCACCCTGTGTTGGACAAGACCACTTACCATCTGATAAACCCGEST: gi|10794734|gb|AU108700.1|AU108700
genomic: CATGGAAGAGAGCCGCCACCATGGAGGATGTCCTCAGGGAGGCCGACGTGgtcagccatc ... tatgtggcagATTAGTCTGCACCCTGTGTTGGACAAGACCACTTACCATCTGATAAACCCG
EST: CATGGAAGAGAGCCGCCACCATGGAGGATGTCCTCAGGGAGGCCGACGTG ATTAGTCTGCACCCTGTGTTGGACAAGACCACTTACCATCTGATAAACCCGEST: gi|11442863|gb|BF430762.1|BF430762
genomic: CATGGAAGAGAGCCGCCACCATGGAGGATGTCCTCAGGGAGGCCGACGTGgtcagccatc ... tatgtggcagATTAGTCTGCACCCTGTGTTGGACAAGACCACTTACCATCTGATAAACCCG
EST: CATGGAAGAGAGCCGCCACCATGGAGGATGTCCTCAGGGAGGCCGACGTG ATTAGTCTGCACCCTGTGTTGGACAAGACCACTTACCATCTGATAAACCCGEST: gi|86906454|gb|CI294577.1|CI294577
genomic: CATGGAAGAGAGCCGCCACCATGGAGGATGTCCTCAGGGAGGCCGACGTGgtcagccatc ... tatgtggcagATTAGTCTGCACCCTGTGTTGGACAAGACCACTTACCATCTGATAAACCCG
EST: CATGGAAGAGAGCCGCCACCATGGAGGATGTCCTCAGGGAGGCCGACGTG ATTAGTCTGCACCCTGTGTTGGACAAGACCACTTACCATCTGATAAACCCGEST: gi|58605093|gb|CK033126.1|CK033126
genomic: CATGGAAGAGAGCCGCCACCATGGAGGATGTCCTCAGGGAGGCCGACGTGgtcagccatc ... tatgtggcagATTAGTCTGCACCCTGTGTTGGACAAGACCACTTACCATCTGATAAACCCG
EST: CATGGAAGAGAGCCGCCACCATGGGGGATGTCCTCAGGGAGGCCGACGTG ATTAGTCTGCACCCTGTGTTGGACAAGACCACTTACCATCTGATAAACCCGEST: gi|38481826|gb|CF965897.1|CF965897
genomic: CATGGAAGAGAGCCGCCACCATGGAGGATGTCCTCAGGGAGGCCGACGTGgtcagccatc ... tatgtggcagATTAGTCTGCACCCTGTGTTGGACAAGACCACTTACCATCTGATAAACCCG
EST: CATGGAAGAGAGCCGCCACCATGGAGGATGTCCTCAGGGAGGCCGACGTG ATTAGTCTGCACCCTGTGTTGGACAAGACCACTTACCATCTGATAAACCCG
genomic: CATGGAAGAGAGCCGCCACCATGGAGGATGTCCTCAGGGAGGCCGACGTGgtcagccatc ... tatgtggcagATTAGTCTGCACCCTGTGTTGGACAAGACCACTTACCATCTGATAAACCCG
ttgattaattatgcaaataaatgcttgtgcatatatatatatatgtatgtggcagATTAGTCTGCACCCTGTGTTGGACAAGACCACTTACCATCTGATAAACCCGGAAAGGCTGGCCATCATGAAGAAG
gattaat putative branch site (score: 3)
atatatatatatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagccatctctctcatcgtctcttctttctttcttcattctaattattaagatgttgattaattatgcaaataaatgcttgtgcatatatatatatatgtatgtggcagATTAGTCTGCACCCTGTGTTGGACAAGACCACTTACCATCTGATAAACCCGGAAAGGCTGGCCATCATGAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG