1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtttgtgttcttacttccttaaggtttgtcaaatgtctgctctttcccttataattcaccccatttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG
species | Oryza sativa |
transcript | LOC_Os01g74650.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|701729|gb|D48020.1|D48020
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|86413547|gb|CI019132.1|CI019132
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|29655936|gb|CB652211.1|CB652211
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|55410639|gb|CV723015.1|CV723015
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|58691812|gb|CK080499.1|CK080499
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|29616466|gb|CB621478.1|CB621478
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|28298176|gb|CB238406.1|CB238406
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAGAACCTG GCCCACATAAGATTCAAGGCATTGGG-CAGGATTTGTTCCAAGGAACTTGGEST: gi|29663371|gb|CB659646.1|CB659646
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|29687246|gb|CB683521.1|CB683521
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|163927355|gb|EG710663.1|EG710663
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|84117136|gb|CD150903.1|CD150903
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|33801701|gb|CF326722.1|CF326722
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGTCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|38480498|gb|CF964587.1|CF964587
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|29655935|gb|CB652210.1|CB652210
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|88847644|gb|CI018335.1|CI018335
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|29672976|gb|CB669251.1|CB669251
genomic: TCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|29677863|gb|CB674138.1|CB674138
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|87008043|gb|CI297021.1|CI297021
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|58690422|gb|CK079109.1|CK079109
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|29616196|gb|CB621208.1|CB621208
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|29644300|gb|CB649307.1|CB649307
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|13420475|gb|AU174565.1|AU174565
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTNGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|300215770|gb|HO088396.1|HO088396
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|29684900|gb|CB681175.1|CB681175
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGEST: gi|38478600|gb|CF962733.1|CF962733
genomic: TATTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGG
EST: ATTTGGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTG GCCCACATAAGATTCAAGGCATTGGGGCAGGA
genomic: ATT-GGTATTGAGCCTTCTGAGAGTAACATACTCTCTGGTGGAAAACCTGgtatgtttgt ... atttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGA
cttaaggtttgtcaaatgtctgctctttcccttataattcaccccatttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG
ccccattt CT-rich tract
ttataattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttgtgttcttacttccttaaggtttgtcaaatgtctgctctttcccttataattcaccccatttgtttagGCCCACATAAGATTCAAGGCATTGGGGCAGGATTTGTTCCAAGGAACTTGGATAGTGAAGTTCTCGATGAAGTGATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA