1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gttatgcaccagacaatgcaattgaattagttgttatagccagatctcactagtctgttacttcatctgcttgttgtatgttaccttctactggttgcagAGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGATCTAAAAGAAGCTTCCCAGAAATCTCCCCAG
species | Oryza sativa |
transcript | LOC_Os01g74580.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTACAGAAGCACTCAACATAGATGGAGAACTTGTTGATGCATTAACACAG AGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGATEST: gi|29616880|gb|CB621892.1|CB621892
genomic: GTACAGAAGCACTCAACATAGATGGAGAACTTGTTGATGCATTAACACAGgttacattac ... ctggttgcagAGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGAT
EST: GTACAGAAGCACTCAACATAGATGGAGAACTTGTTGATGCATTAACACAG AGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGATEST: gi|58597523|gb|CK008051.1|CK008051
genomic: GTACAGAAGCACTCAACATAGATGGAGAACTTGTTGATGCATTAACACAGgttacattac ... ctggttgcagAGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGAT
EST: GTACAGAAGCACTCAACATAGATCGAGAACTTGTTGATGCATTAACACAG AGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTEST: gi|86496076|gb|CI138709.1|CI138709
genomic: GTACAGAAGCACTCAACATAGATGGAGAACTTGTTGATGCATTAACACAGgttacattac ... ctggttgcagAGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTT
EST: AGCACTCAACATAGATGGAGAACTTGTTGATGCA-TAACAACAG AGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGAEST: gi|58681128|gb|CK069815.1|CK069815
genomic: AGCACTCAACATAGATGGAGAACTTGTTGATGCATTAAC-ACAGgttacattac ... ctggttgcagAGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGA
EST: GTACAGAAGCACTCAACATAGATGGAGAACTTGTTGATGCATTAACACAG AGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGAT
genomic: GTACAGAAGCACTCAACATAGATGGAGAACTTGTTGATGCATTAACACAGgttacattac ... ctggttgcagAGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGAT
ctcactagtctgttacttcatctgcttgttgtatgttaccttctactggttgcagAGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGATCTAAAAGAAGCTTCCCAGAAATCTCCCCAG
atctcac putative branch site (score: 40)
ccttctact putative PPT
tatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatgcaccagacaatgcaattgaattagttgttatagccagatctcactagtctgttacttcatctgcttgttgtatgttaccttctactggttgcagAGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGATCTAAAAGAAGCTTCCCAGAAATCTCCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC