1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatcaaaatctgaattggatttgtagcagtgtactagtacttactactcggtgatgattaatgtgactgaacgggcgtgttgattgattgtcaagAGGTTGTGATATCTGTGCTGATGAAACTGGCCGGAGGGTGCCCGTCGCTTGCGGACCAGCTGAACGTGGACGCCTTCCTGGAGCAAGCTCGCTCCTACGA
species | Oryza sativa |
transcript | LOC_Os01g73910.5 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGAGCTGACTTGTGATCGAGCGGCTCTTCTTGTAGTGCAGGACCCCAAG AGGTTGTGATATCTGTGCTGATGAAACTGGCCGGAGGGTGCCGGTCGCTTGEST: gi|313079079|gb|HO213970.1|HO213970
genomic: CAGAGCTGACTTGTGATCGAGCGGCTCTTCTTGTAGTGCAGGACCCCAAGgtaatcaaaa ... gattgtcaagAGGTTGTGATATCTGTGCTGATGAAACTGGCCGGAGGGTGCCCGTCGCTTG
EST: CAGAGCTGACTTGTGATCGAGCGGCTCTTCTTGTAGTGCAGGACCCCAAG -G-TTGTGATATCTGTGCTGATGAAACTGGCCGGAGGGTGCCCGTCGCTTGEST: gi|29624825|gb|CB629836.1|CB629836
genomic: CAGAGCTGACTTGTGATCGAGCGGCTCTTCTTGTAGTGCAGGACCCCAAGgtaatcaaaa ... gattgtcaagAGGTTGTGATATCTGTGCTGATGAAACTGGCCGGAGGGTGCCCGTCGCTTG
EST: CAGAGCTGACTTGTGATCGAGCGGCTCTTCTTGTAGTGCAGGACCCCAAG -G-TTGTGATATCTGTGCTGATGAAACTGGCCGGAGGGTGCCCGTCGCTTG
genomic: CAGAGCTGACTTGTGATCGAGCGGCTCTTCTTGTAGTGCAGGACCCCAAGgtaatcaaaa ... gattgtcaagAGGTTGTGATATCTGTGCTGATGAAACTGGCCGGAGGGTGCCCGTCGCTTG
ttactactcggtgatgattaatgtgactgaacgggcgtgttgattgattgtcaagAGGTTGTGATATCTGTGCTGATGAAACTGGCCGGAGGGTGCCCGTCGCTTGCGGACCAGCTGAACGTGGACGCCTTCCTGGAGCAAGCTCGCTCCTACGA
atgattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcaaaatctgaattggatttgtagcagtgtactagtacttactactcggtgatgattaatgtgactgaacgggcgtgttgattgattgtcaagAGGTTGTGATATCTGTGCTGATGAAACTGGCCGGAGGGTGCCCGTCGCTTGCGGACCAGCTGAACGTGGACGCCTTCCTGGAGCAAGCTCGCTCCTACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT