Sequence
atgc intronic sequence ATGC exonic sequencegtaatgtatagctttgctttacctgtttacctcaagttgcagctgattttcacaaaattcataacagGATGCAGAGCGTGGACGATTGTTTTCGTTGCATGAACAAATTGATCACAAG
Basic information
species | Oryza sativa |
transcript | LOC_Os01g72870.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g72870.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G133959_T01 (Zea mays), 3'ss of exon 4
----------------------------------------------------------------------------------------------------------------------------gtaatgtatag---ctttgctttacctgtttacctcaa-gttgcagctgattttcacaaaattcataacagGATGCAGAGCGTGGACGATTGTTTTCGTTGCATGAACAAATTGATCACAAG
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gtaacttacacagcttaactgatgtttgtttcacattcaatgcaactatgagtgccaacaacccgacaggaaaccttgtaatgcatgtacattagaggcccttaagtgtctgggttacaatttaattctgtctagattccttatccagcatatttatattgccagcggaactgattttaatacatcttatgacagGATTGCGAGCATGGGCGATTGTTTTCGTTGTATGAACAAATTGACCACAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27576528|gb|CA999222.1|CA999222EST: CGATTGGGCATATTTCACATAGCAAAAAG GATGCAGAGCGTGGACGATTGTTTTCGTTGCATGAACAAATTGATCACAAG
genomic: CGATTGGGCATATTTCACATAGCAAAAAGgtaatgtata ... ttcataacagGATGCAGAGCGTGGACGATTGTTTTCGTTGCATGAACAAATTGATCACAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgctttacctgtttacctcaagttgcagctgattttcacaaaattcataacagGATGCAGAGCGTGGACGATTGTTTTCGTTGCATGAACAAATTGATCACAAG
agctgat putative branch site (score: 4)
attttcacaaaatt TA-rich tract