1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agaggggacatcccttgagggattaaaaacagttcccctagtttaatcttcgagttcttttcatcttacaagttacaatttctgtctatatatgtgctagGTTTTCAACGAGGTGAACAGCAGGGAGATGGAGAAGATCAACGTTTTCAGCGGCATCTTCAGCAGCTGGATCTTCTCGGCGGTGGTCGGCGTCACGGCGG
species | Oryza sativa |
transcript | LOC_Os01g71240.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGACAGCCTACTCAACACCTTCGTCTTCAACACCTTTGTCTTCTGCCAG GTTTTCAACGAGGTGAACAGCAGGGAGATGGAGAAGATCAACGTTTTCAGCEST: gi|86478163|gb|CI120796.1|CI120796
genomic: CTGACAGCCTACTCAACACCTTCGTCTTCAACACCTTTGTCTTCTGCCAGgtaactatac ... tatgtgctagGTTTTCAACGAGGTGAACAGCAGGGAGATGGAGAAGATCAACGTTTTCAGC
EST: CTGACAGCCTACTCAACACCTTCGTCTTCAACACCTTTGTCTTCTGCCAG GTTTTCAACGAGGTGAACAGCAGGGAGATGGAGAAGATCAACGTTTTCAGCEST: gi|86858200|gb|CI271102.1|CI271102
genomic: CTGACAGCCTACTCAACACCTTCGTCTTCAACACCTTTGTCTTCTGCCAGgtaactatac ... tatgtgctagGTTTTCAACGAGGTGAACAGCAGGGAGATGGAGAAGATCAACGTTTTCAGC
EST: CTGACAGCCTACTCAACACCTTCGTCTTCAACACCTTTGTCTTCTGCCAG GTTTTCAACGAGGTGAACAGCAGGGAGATGGAGAAGATCAACGTTTTCAGCEST: gi|87030199|gb|CI270209.1|CI270209
genomic: CTGACAGCCTACTCAACACCTTCGTCTTCAACACCTTTGTCTTCTGCCAGgtaactatac ... tatgtgctagGTTTTCAACGAGGTGAACAGCAGGGAGATGGAGAAGATCAACGTTTTCAGC
EST: CTGACAGCCTACTCAACACCTTCGTCTTCAACACCTTTGTCTTCTGCCAG GTTTTCAACGAGGTGAACAGCAGGGAGATGGAGAAGATCAACGTTTTCAGCEST: gi|86858220|gb|CI271114.1|CI271114
genomic: CTGACAGCCTACTCAACACCTTCGTCTTCAACACCTTTGTCTTCTGCCAGgtaactatac ... tatgtgctagGTTTTCAACGAGGTGAACAGCAGGGAGATGGAGAAGATCAACGTTTTCAGC
EST: CTGACAGCCTACTCAACACCTTCGTCTTCAACACCTTTGTCTTCTGCCAG GTTTTCAACGAGGTGGACAGCAGGGAGATGGAGAAGATCAACGTTTTCAGC
genomic: CTGACAGCCTACTCAACACCTTCGTCTTCAACACCTTTGTCTTCTGCCAGgtaactatac ... tatgtgctagGTTTTCAACGAGGTGAACAGCAGGGAGATGGAGAAGATCAACGTTTTCAGC
atcttcgagttcttttcatcttacaagttacaatttctgtctatatatgtgctagGTTTTCAACGAGGTGAACAGCAGGGAGATGGAGAAGATCAACGTTTTCAGCGGCATCTTCAGCAGCTGGATCTTCTCGGCGGTGGTCGGCGTCACGGCGG
atcttac putative branch site (score: 16)
ttacaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaggggacatcccttgagggattaaaaacagttcccctagtttaatcttcgagttcttttcatcttacaagttacaatttctgtctatatatgtgctagGTTTTCAACGAGGTGAACAGCAGGGAGATGGAGAAGATCAACGTTTTCAGCGGCATCTTCAGCAGCTGGATCTTCTCGGCGGTGGTCGGCGTCACGGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - catccct
- - - - - - - - - - - - aaaaaca