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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgatcataggatgttatagaaatgatcacaagttacctagtgatatttcatagagagtggacctgaaatcctaatctccagtgtcactgcaaacgcagGGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAGGGTTGCACACTGGATTACAATTGATGAACCTAATGTTGCTTCAATTGGG

Basic information

species Oryza sativa
transcript LOC_Os01g70520.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29612788|gb|CB617801.1|CB617801
EST:     CCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTT                         GGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAG
genomic: CCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTTgtaagacccc ... gcaaacgcagGGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAG
EST: gi|29620623|gb|CB625634.1|CB625634
EST:     CCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTT                         GGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAG
genomic: CCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTTgtaagacccc ... gcaaacgcagGGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAG
EST: gi|58678434|gb|CK067121.1|CK067121
EST:     CCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTT                         GGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAG
genomic: CCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTTgtaagacccc ... gcaaacgcagGGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAG
EST: gi|29619009|gb|CB624021.1|CB624021
EST:     CCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTT                         GGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAG
genomic: CCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTTgtaagacccc ... gcaaacgcagGGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAG
EST: gi|58593808|gb|CF992116.1|CF992116
EST:     CCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAAATTT                         GGAGGATTTCAAAGCATATGCAGATGTGTGC
genomic: CCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTTgtaagacccc ... gcaaacgcagGGAGGATTTCAAAGCATATGCAGATGTGTGC
EST: gi|117242417|gb|CT842994.1|CT842994
EST:     CCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTT                         GGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAG
genomic: CCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTTgtaagacccc ... gcaaacgcagGGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAG
EST: gi|29614528|gb|CB619541.1|CB619541
EST:     CCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTT                         GGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAG
genomic: CCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTTgtaagacccc ... gcaaacgcagGGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAG
EST: gi|58689675|gb|CK078362.1|CK078362
EST:     CCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTT                         GGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAG
genomic: CCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTTgtaagacccc ... gcaaacgcagGGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttcatagagagtggacctgaaatcctaatctccagtgtcactgcaaacgcagGGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAGGGTTGCACACTGGATTACAATTGATGAACCTAATGTTGCTTCAATTGGG
                         tcctaat  putative branch site (score: 2)