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gtaagctcactgataattgacagctactcttgcaagcgatgagctcaacaatggatcacaatacataatgcttccctttattttcttccagATCCTGCACACTTGGAAGAGGTATTGAGAGAGCAGATTGCAGGAGGCCAGCCTCGTACACACAGGCCGTGGAAGAAGATTATTGTGATTGTTGAGGGAAT
species | Oryza sativa |
transcript | LOC_Os01g70380.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAATGGGGCTAGGGGTTCAGGAGCTACTGTTCGGGTTTTTCAACATAACA ATCCTGCACACTTGGAAGAGGTATTGAGAGAGCAGATTGCAGGAGGCCAGCEST: gi|58598499|gb|CK009027.1|CK009027
genomic: GAATGGGGCTAGGGGTTCAGGAGCTACTGTTCGGGTTTTTCAACATAACAgtaagctcac ... tttcttccagATCCTGCACACTTGGAAGAGGTATTGAGAGAGCAGATTGCAGGAGGCCAGC
EST: GAATGGGGCTAGGGGTTCAGGAGCTACTGTTCGGGTTTTTCAACATAACA ATCCTGCACACTTGGAAGAGGTATTGAGAGAGCAGATTGCAGGAGGCCAGC
genomic: GAATGGGGCTAGGGGTTCAGGAGCTACTGTTCGGGTTTTTCAACATAACAgtaagctcac ... tttcttccagATCCTGCACACTTGGAAGAGGTATTGAGAGAGCAGATTGCAGGAGGCCAGC
cgatgagctcaacaatggatcacaatacataatgcttccctttattttcttccagATCCTGCACACTTGGAAGAGGTATTGAGAGAGCAGATTGCAGGAGGCCAGCCTCGTACACACAGGCCGTGGAAGAAGATTATTGTGATTGTTGAGGGAAT
tgcttccctttatttt CT-rich tract
tttattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctcactgataattgacagctactcttgcaagcgatgagctcaacaatggatcacaatacataatgcttccctttattttcttccagATCCTGCACACTTGGAAGAGGTATTGAGAGAGCAGATTGCAGGAGGCCAGCCTCGTACACACAGGCCGTGGAAGAAGATTATTGTGATTGTTGAGGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG