1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tggactgaactaagtaggcattaatacatatatttggataagaaggcaaccagtatgattttatttgttcacctgtacttatcattcactgtgaattcagTTCTTCAGGACAGAACCATATGCCTGTGAACCATCAAGCCTTCCCCGGTATCCACCATGTAAAGAAATAGATGTGAAGTTGAAGTATGAGAAGCATAAAA
species | Oryza sativa |
transcript | LOC_Os01g70130.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTATTGATCCTGACATGAGAGGCACAGCAACTGATGCTCTCAACAGTGAG TTCTTCAGGACAGAACCATATGCCTGTGAACCATCAAGCCTTCCCCGGTATEST: gi|29615708|gb|CB620720.1|CB620720
genomic: CTATTGATCCTGACATGAGAGGCACAGCAACTGATGCTCTCAACAGTGAGgttaataccg ... gtgaattcagTTCTTCAGGACAGAACCATATGCCTGTGAACCATCAAGCCTTCCCCGGTAT
EST: CTATTGATCCTGACATGAGAGGCACAGCAACTGATGCTCTCAACAGTGAG TTCTTCAGGACAGAACCATATGCCTGTGAACCATCAAGCCTTCCCCGGTAT
genomic: CTATTGATCCTGACATGAGAGGCACAGCAACTGATGCTCTCAACAGTGAGgttaataccg ... gtgaattcagTTCTTCAGGACAGAACCATATGCCTGTGAACCATCAAGCCTTCCCCGGTAT
gcaaccagtatgattttatttgttcacctgtacttatcattcactgtgaattcagTTCTTCAGGACAGAACCATATGCCTGTGAACCATCAAGCCTTCCCCGGTATCCACCATGTAAAGAAATAGATGTGAAGTTGAAGTATGAGAAGCATAAAA
tatgattttatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggactgaactaagtaggcattaatacatatatttggataagaaggcaaccagtatgattttatttgttcacctgtacttatcattcactgtgaattcagTTCTTCAGGACAGAACCATATGCCTGTGAACCATCAAGCCTTCCCCGGTATCCACCATGTAAAGAAATAGATGTGAAGTTGAAGTATGAGAAGCATAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - gaactaa
- - - - - - - - - - - - - - - - - - gataagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattcac