1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttcagtcatctttctgctgtttgcatgtgcacaagtgaaatttatttatccagaatgaaaatgacttaacttatcaggatggttttctctgcaggtttagGGGCCACCTGAACCTGGCTGGAAGCATTTACTCAAAACAACTCAACACCATCACAGAGAGACGAGAGGAAAAGCTTGTGAAGAAGTAACTCAAACTCCCT
species | Oryza sativa |
transcript | LOC_Os01g66970.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAGCCCGTTCTTGTTATGCTTTTCAACACCGGAGGCGAAGACAG GTTTAGGGGCCACCTGAACCTGGCTGGAAGCATTTACTCAAAACAACTCAAEST: gi|88263819|gb|CI367593.1|CI367593
genomic: TAGCCCGTTCTTGTTATGCTTTTCAACACCGGAGGCGAAGACAGgtatacttcc ... gcaggtttagG----GG--CCACCTGAACCTGGCTGGAAGCATTTACTCAAAACAACTCAA
EST: ATGTTATAGCCCGTTCTTGTTATGCTTTTCAACACCGGAGGCGAAGACAG GTTTAGGGGCCACCTGAACCTGGCTGGAAGCATTTACTCAAAACAACTCAAEST: gi|86889269|gb|CI315880.1|CI315880
genomic: ATGTTATAGCCCGTTCTTGTTATGCTTTTCAACACCGGAGGCGAAGACAGgtatacttcc ... gcaggtttagG----GG--CCACCTGAACCTGGCTGGAAGCATTTACTCAAAACAACTCAA
EST: ATGTTATAGCCCGTTCTTGTTATGCTTTTCAACACCGGAGGCGAAGACAG GTTTAGGGGCCACCTGAACCTGGCTGGAAGCATTTACTCAAAACAACTCAAEST: gi|58694156|gb|CK082843.1|CK082843
genomic: ATGTTATAGCCCGTTCTTGTTATGCTTTTCAACACCGGAGGCGAAGACAGgtatacttcc ... gcaggtttagG----GG--CCACCTGAACCTGGCTGGAAGCATTTACTCAAAACAACTCAA
EST: ATGTTATAGCCCGTTCTTGTTATGCTTTTCAACACCGGAGGCGAAGACAG GTTTAGGGGCCACCTGAACCTGGCTGGAAGCATTTACTCAAAACAACTCAAEST: gi|88268805|gb|CI377709.1|CI377709
genomic: ATGTTATAGCCCGTTCTTGTTATGCTTTTCAACACCGGAGGCGAAGACAGgtatacttcc ... gcaggtttagG----GG--CCACCTGAACCTGGCTGGAAGCATTTACTCAAAACAACTCAA
EST: ATGTTATAGCCCGTTCTTGTTATGCTTTTCAACACCGGAGGCGAAGACAG GTTTAGGGGCCACCTGAACCTGGCTGGAAGCATTTACTCAAAACAACTCAAEST: gi|88963723|gb|CI031075.1|CI031075
genomic: ATGTTATAGCCCGTTCTTGTTATGCTTTTCAACACCGGAGGCGAAGACAGgtatacttcc ... gcaggtttagG----GG--CCACCTGAACCTGGCTGGAAGCATTTACTCAAAACAACTCAA
EST: ATGTTATAGCCCGTTCTTGTTATGCTTTTCAACACCGGAGGCGAAGACAG GTTTAGGGGCCACCTGAACCTGGCTGGAAGCATTTACTCAAAACAACTCAAEST: gi|88966199|gb|CI013075.1|CI013075
genomic: ATGTTATAGCCCGTTCTTGTTATGCTTTTCAACACCGGAGGCGAAGACAGgtatacttcc ... gcaggtttagG----GG--CCACCTGAACCTGGCTGGAAGCATTTACTCAAAACAACTCAA
EST: ATGTTATAGCCCGTTCTTGTTATGCTTTTCAACACCGGAGGCGAAGACAG GTTTAGGGGCCACCTGAACCTGGCTGGAAGCATTTACTCAAAACAACTCAAEST: gi|14192139|gb|AU184350.1|AU184350
genomic: ATGTTATAGCCCGTTCTTGTTATGCTTTTCAACACCGGAGGCGAAGACAGgtatacttcc ... gcaggtttagG----GG--CCACCTGAACCTGGCTGGAAGCATTTACTCAAAACAACTCAA
EST: GTTCTTGTTATGCTTTTCAACACCGGAGGCGAAGACAG GTTTAGGGGCCACCTGAACCTGGCTGGAAGCATTTACTCAAAACAACTCAA
genomic: GTTCTTGTTATGCTTTTCAACACCGGAGGCGAAGACAGgtatacttcc ... gcaggtttagG----GG--CCACCTGAACCTGGCTGGAAGCATTTACTCAAAACAACTCAA
ttatccagaatgaaaatgacttaacttatcaggatggttttctctgcaggtttagGGGCCACCTGAACCTGGCTGGAAGCATTTACTCAAAACAACTCAACACCATCACAGAGAGACGAGAGGAAAAGCTTGTGAAGAAGTAACTCAAACTCCCT
acttaac putative branch site (score: 3)
ttttctctgc putative PPT
aatgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcagtcatctttctgctgtttgcatgtgcacaagtgaaatttatttatccagaatgaaaatgacttaacttatcaggatggttttctctgcaggtttagGGGCCACCTGAACCTGGCTGGAAGCATTTACTCAAAACAACTCAACACCATCACAGAGAGACGAGAGGAAAAGCTTGTGAAGAAGTAACTCAAACTCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - tgctgtt
- - - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - gcacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaaaa