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...agcagaatgttttttaactcactttggaatgttactagtctcatactactatacttaattcagcagttatcctgactttgccttgttattttaaatgaagCTGGGCACTGGCTTGAGCATCTTCATTTCAAAACGGAATCCATCATTGGTGACTTCATTTGCCTTCCTTTCATGTGGTTATCTTTGGAGTTCATATCATG
species | Oryza sativa |
transcript | LOC_Os01g66350.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGGAGATGTCACTGCTAAAGGCGAATCTGTTGGGAACATTGCAGATCTG CTGGGCACTGGCTTGAGCATCTTCATTTCAAAACGGAATCCATCATTGGTGEST: gi|29662114|gb|CB658389.1|CB658389
genomic: TTGGAGATGTCACTGCTAAAGGCGAATCTGTTGGGAACATTGCAGATCTGgtaattatta ... ttaaatgaagCTGGGCACTGGCTTGAGCATCTTCATTTCAAAACGGAATCCATCATTGGTG
EST: TTGGAGATGTCACTGCTAAAGGCGAATCTGTTGGGAACATTGCAGATCTG CTGGGCACTGGCTTGAGCATCTTCATTTCAAAACGGAATCCATCATTGGTGEST: gi|29685831|gb|CB682106.1|CB682106
genomic: TTGGAGATGTCACTGCTAAAGGCGAATCTGTTGGGAACATTGCAGATCTGgtaattatta ... ttaaatgaagCTGGGCACTGGCTTGAGCATCTTCATTTCAAAACGGAATCCATCATTGGTG
EST: TTGGAGATGTCACTGCTAAAGGCGAATCTGTTGGGAACATTGCAGATCTG CTGGGCACTGGCTTGAGCATCTTCATTTCAAAACGGAATCCATCATTGGTGEST: gi|29681946|gb|CB678221.1|CB678221
genomic: TTGGAGATGTCACTGCTAAAGGCGAATCTGTTGGGAACATTGCAGATCTGgtaattatta ... ttaaatgaagCTGGGCACTGGCTTGAGCATCTTCATTTCAAAACGGAATCCATCATTGGTG
EST: TTGGAGATGTCACTGCTAAAGGCGAATCTGTTGGGAACATTGCAGATCTG CTGGGCACTGGCTTGAGCATCTTCATTTCAAAACGGAATCCATCATTGGTG
genomic: TTGGAGATGTCACTGCTAAAGGCGAATCTGTTGGGAACATTGCAGATCTGgtaattatta ... ttaaatgaagCTGGGCACTGGCTTGAGCATCTTCATTTCAAAACGGAATCCATCATTGGTG
ctactatacttaattcagcagttatcctgactttgccttgttattttaaatgaagCTGGGCACTGGCTTGAGCATCTTCATTTCAAAACGGAATCCATCATTGGTGACTTCATTTGCCTTCCTTTCATGTGGTTATCTTTGGAGTTCATATCATG
tcctgac putative branch site (score: 31)
ttatttt putative PPT
ttgttattttaaatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcagaatgttttttaactcactttggaatgttactagtctcatactactatacttaattcagcagttatcctgactttgccttgttattttaaatgaagCTGGGCACTGGCTTGAGCATCTTCATTTCAAAACGGAATCCATCATTGGTGACTTCATTTGCCTTCCTTTCATGTGGTTATCTTTGGAGTTCATATCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
agcagaa
- - - - - - - - - - - - - - -tgttact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagcagt