1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tttcatttcttgttattttatatcttagtagctttcagttcacctcagcctttttcccatttatctgtcaccttatgctaattaatccaaaatgcaacagATAGTGCAGCTCAGGCTAACCCCACGGGTGCTGGTTGGTCACAGCTTTGGTGGAAAAG
species | Oryza sativa |
transcript | LOC_Os01g66240.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAGAGGACCGCATACTGTTGCCTCAACTGCTCTTGATGTTCTAAAGCTG ATAGTGCAGCTCAGGCTAACCCCACGGGTGCTGGTTGGTCACAGCTTTGGTEST: gi|58602366|gb|CK012894.1|CK012894
genomic: AAAGAGGACCGCATACTGTTGCCTCAACTGCTCTTGATGTTCTAAAGCTGgtttgtgttt ... aatgcaacagATAGTGCAGCTCAGGCTAACCCCACGGGTGCTGGTTGGTCACAGCTTTGGT
EST: AAAGAGGACCGCATACTGTTGCCTCAACTGCTCTTGATGTTCTAAAGCTG ATAGTGCAGCTCAGGCTAACCCCACGGGTGCTGGTTGGTCACAGCTTTGGT
genomic: AAAGAGGACCGCATACTGTTGCCTCAACTGCTCTTGATGTTCTAAAGCTGgtttgtgttt ... aatgcaacagATAGTGCAGCTCAGGCTAACCCCACGGGTGCTGGTTGGTCACAGCTTTGGT
cagcctttttcccatttatctgtcaccttatgctaattaatccaaaatgcaacagATAGTGCAGCTCAGGCTAACCCCACGGGTGCTGGTTGGTCACAGCTTTGGTGGAAAAG
taattaatccaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcatttcttgttattttatatcttagtagctttcagttcacctcagcctttttcccatttatctgtcaccttatgctaattaatccaaaatgcaacagATAGTGCAGCTCAGGCTAACCCCACGGGTGCTGGTTGGTCACAGCTTTGGTGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
tttcatt
- - - - - - - - - - - - - - - gctttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatccaa