1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aacaaaatgcaagtatagtggatacgccaagggtttcttgtagttgtaggccttgtattggaattgtaataactgaaaatgcattgttcatgttggacagGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAACCTACGAGGAGCTTTTTGATGGAGAAATCTAAAAGAATGGAAATCACC
species | Oryza sativa |
transcript | LOC_Os01g62880.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAG GTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAEST: gi|88482073|gb|CI419344.1|CI419344
genomic: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGgcaagtgcat ... tgttggacagGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAA
EST: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAG GTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAEST: gi|86497899|gb|CI140532.1|CI140532
genomic: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGgcaagtgcat ... tgttggacagGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAA
EST: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAG GTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAEST: gi|88486762|gb|CI424033.1|CI424033
genomic: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGgcaagtgcat ... tgttggacagGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAA
EST: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAG GTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAEST: gi|86495195|gb|CI137828.1|CI137828
genomic: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGgcaagtgcat ... tgttggacagGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAA
EST: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAG GTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAEST: gi|9865213|gb|AU100963.1|AU100963
genomic: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGgcaagtgcat ... tgttggacagGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAA
EST: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAG GTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAEST: gi|88250236|gb|CI348466.1|CI348466
genomic: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGgcaagtgcat ... tgttggacagGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAA
EST: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAG GTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAEST: gi|86862765|gb|CI331649.1|CI331649
genomic: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGgcaagtgcat ... tgttggacagGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAA
EST: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAG GTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAEST: gi|88441514|gb|CI554738.1|CI554738
genomic: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGgcaagtgcat ... tgttggacagGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAA
EST: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAG GTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAEST: gi|86595317|gb|CI262555.1|CI262555
genomic: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGgcaagtgcat ... tgttggacagGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAA
EST: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAG GTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAEST: gi|88269472|gb|CI380770.1|CI380770
genomic: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGgcaagtgcat ... tgttggacagGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAA
EST: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAG GTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAEST: gi|88257105|gb|CI359493.1|CI359493
genomic: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGgcaagtgcat ... tgttggacagGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAA
EST: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAG GTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAEST: gi|33689716|gb|CF317955.1|CF317955
genomic: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGgcaagtgcat ... tgttggacagGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAA
EST: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTTTCTGAAATCGAACAG GTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTTTACAAAEST: gi|87025584|gb|CI254630.1|CI254630
genomic: GTTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACAGgcaagtgcat ... tgttggacagGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAA
EST: TTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAACCAG GTTAAGCAAATCCAGAGGAGATGGATTTGCTCACCCCCGAGAGTGTCTAC
genomic: TTGGTCTATTCCTGAGGAACTGTGTGCCAAGCTCTCTGAAATCGAAC-AGgcaagtgcat ... tgttggacagGTTAAGCAAATC-AGAGGAGATGGATTTGCTCACCCC-GAGAGTGTCTAC
gtaggccttgtattggaattgtaataactgaaaatgcattgttcatgttggacagGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAACCTACGAGGAGCTTTTTGATGGAGAAATCTAAAAGAATGGAAATCACC
taataac putative branch site (score: 1)
taataactgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaaaatgcaagtatagtggatacgccaagggtttcttgtagttgtaggccttgtattggaattgtaataactgaaaatgcattgttcatgttggacagGTTAAGCAAATCAGAGGAGATGGATTTGCTCACCCCGAGAGTGTCTACAAAACCTACGAGGAGCTTTTTGATGGAGAAATCTAAAAGAATGGAAATCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA