1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atatcttctagtgaattccaacctgcttttacaacacatggaaccctaaattctagtaaaaattttggccctgcacttttaacagctagttcttttgcagATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG
species | Oryza sativa |
transcript | LOC_Os01g62810.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAG ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAGEST: gi|29617735|gb|CB622747.1|CB622747
genomic: TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAGgtaagccctt ... tcttttgcagATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG
EST: TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAG ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAGEST: gi|29664301|gb|CB660576.1|CB660576
genomic: TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAGgtaagccctt ... tcttttgcagATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG
EST: TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAG ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAGEST: gi|29677605|gb|CB673880.1|CB673880
genomic: TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAGgtaagccctt ... tcttttgcagATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG
EST: CAGTGCTGTAGTAACAG ATTCAGGACCACTACTTACATTTGGATGGGGACTGTACGGACAGEST: gi|29670637|gb|CB666912.1|CB666912
genomic: CAGTGCTGTAGTAACAGgtaagccctt ... tcttttgcagATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG
EST: TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAG ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAGEST: gi|86900111|gb|CI300166.1|CI300166
genomic: TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAGgtaagccctt ... tcttttgcagATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG
EST: TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAG ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG
genomic: TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAGgtaagccctt ... tcttttgcagATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG
ctaaattctagtaaaaattttggccctgcacttttaacagctagttcttttgcagATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG
ttttaac putative branch site (score: 2)
ttcttttgc putative PPT
ttctagtaaaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatcttctagtgaattccaacctgcttttacaacacatggaaccctaaattctagtaaaaattttggccctgcacttttaacagctagttcttttgcagATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA