1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaacctagcactagcatagtatcatttgtcagcacaatgctatggttcatccttgaagctaaacaagatataaagtaataatgcacattcaactttttttttctagctgacactgtttatgccattacacgtgcagTATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACTGGTGTCCTCTGTGAG
species | Oryza sativa |
transcript | LOC_Os01g61810.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGGTTGGGGCTTACACCCAAGGGATGGGTTATATGCAACCTCAG TATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACTEST: gi|218487228|gb|FG968027.1|FG968027
genomic: ATGGTTGGGGCTTACACCCAAGGGATGGGTTATATGCAACCTCAGgtaacctagc ... acacgtgcagTATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACT
EST: ATGGTTGGGGCTTACACCCAAGGGATGGGTTATATGCAACCTCAG TATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACTEST: gi|88457008|gb|CI529209.1|CI529209
genomic: ATGGTTGGGGCTTACACCCAAGGGATGGGTTATATGCAACCTCAGgtaacctagc ... acacgtgcagTATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACT
EST: CCAAGGGATGGGTTATATGCAACCTCAG TATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACTEST: gi|25797854|gb|CA753815.1|CA753815
genomic: CCAAGGGATGGGTTATATGCAACCTCAGgtaacctagc ... acacgtgcagTATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACT
EST: ATGGTTGGGGCTTACACCCAAGGGATGGGTTATATGCAACCTCAG TATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACTEST: gi|1631561|gb|C19290.1|C19290
genomic: ATGGTTGGGGCTTACACCCAAGGGATGGGTTATATGCAACCTCAGgtaacctagc ... acacgtgcagTATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACT
EST: ATGGTTGGGGCTTACACCCAAGGGATGGGTTATATGCAACCTCAG TATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACTEST: gi|88455291|gb|CI519312.1|CI519312
genomic: ATGGTTGGGGCTTACACCCAAGGGATGGGTTATATGCAACCTCAGgtaacctagc ... acacgtgcagTATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACT
EST: CCAAGGGATGGGTTATATGCAACCTCAG TATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACT
genomic: CCAAGGGATGGGTTATATGCAACCTCAGgtaacctagc ... acacgtgcagTATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACT
tgcacattcaactttttttttctagctgacactgtttatgccattacacgtgcagTATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACTGGTGTCCTCTGTGAG
agctgac putative branch site (score: 3)
attcaacttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacctagcactagcatagtatcatttgtcagcacaatgctatggttcatccttgaagctaaacaagatataaagtaataatgcacattcaactttttttttctagctgacactgtttatgccattacacgtgcagTATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACTGGTGTCCTCTGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG