1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...taaagtattaaaatgctttatgatgtacagatatctgttgtggaagctatttttttcccctttcaagttagttgattagttcctttgttggttgaatcagAATAAAGCTCCTGAGAATAAGGCAAATCCTACTCCAGCAAAAAATAACAAACCTTCTGGGGATAAAAAGAAAGCCCAGGAGAAATCTGCAGGAAAACCAA
species | Oryza sativa |
transcript | LOC_Os01g60660.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGTGGGCAAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAG AATAAAGCTCCTGAGAATAAGGCAAATCCTACTCCAGCAAAAAATAACAAAEST: gi|29642107|gb|CB647114.1|CB647114
genomic: ATGTGGGCAAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAGgtagttcatt ... gttgaatcagAATAAAGCTCCTGAGAATAAGGCAAATCCTACTCCAGCAAAAAATAACAAA
EST: ATGTGGGCAAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAG AATAAAGCTCCTGAGAATAAGGCAAATCCTACTCCAGCAAAAAATAACAAAEST: gi|88266358|gb|CI377260.1|CI377260
genomic: ATGTGGGCAAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAGgtagttcatt ... gttgaatcagAATAAAGCTCCTGAGAATAAGGCAAATCCTACTCCAGCAAAAAATAACAAA
EST: ATGTGGGCAAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAG AATAAAGCTCCTGEST: gi|25800390|gb|CA756351.1|CA756351
genomic: ATGTGGGCAAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAGgtagttcatt ... gttgaatcagAATAAAGCTCCTG
EST: ATGTGGGCAAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAG AATAAAGCTCCTGAGAATAAGGNCAA-TCCTACTCCAGCAAAAA-TAACAAEST: gi|29642063|gb|CB647070.1|CB647070
genomic: ATGTGGGCAAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAGgtagttcatt ... gttgaatcagAATAAAGCTCCTGAGAATAAGG-CAAATCCTACTCCAGCAAAAAATAACAA
EST: ATGTGGGCAAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAG AATAAAGCTCCTGAGAATAAGGCAAATCCTACTCCAGCAAAAAATAACAAAEST: gi|29672821|gb|CB669096.1|CB669096
genomic: ATGTGGGCAAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAGgtagttcatt ... gttgaatcagAATAAAGCTCCTGAGAATAAGGCAAATCCTACTCCAGCAAAAAATAACAAA
EST: ATGTGGGCCAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAA AATAAAGCTCCTGAAAATAAGGCAAATCCTACTCCAGCAAAAAATAACAAA
genomic: ATGTGGGCAAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAGgtagttcatt ... gttgaatcagAATAAAGCTCCTGAGAATAAGGCAAATCCTACTCCAGCAAAAAATAACAAA
gctatttttttcccctttcaagttagttgattagttcctttgttggttgaatcagAATAAAGCTCCTGAGAATAAGGCAAATCCTACTCCAGCAAAAAATAACAAACCTTCTGGGGATAAAAAGAAAGCCCAGGAGAAATCTGCAGGAAAACCAA
agttgat putative branch site (score: 21)
tttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaagtattaaaatgctttatgatgtacagatatctgttgtggaagctatttttttcccctttcaagttagttgattagttcctttgttggttgaatcagAATAAAGCTCCTGAGAATAAGGCAAATCCTACTCCAGCAAAAAATAACAAACCTTCTGGGGATAAAAAGAAAGCCCAGGAGAAATCTGCAGGAAAACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG