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...acattcaaggagcacctgaaagtttcttatagcagtatttaacagtaaaaatggtttttagactcatctccaaaaatattgatctctggactcattgcagGGTGTTTAATTTATGAGCTCTTTTCTGGTGCAAAGCTAACCAGGACAGAGGACCTTCGGAACACTGCTTCAATCCCAAAG
species | Oryza sativa |
transcript | LOC_Os01g60440.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGTGTCAATTAGGAAATCACCTCCATGGGCAATTGATTCCTGGGGACTGG GGTGTTTAATTTATGAGCTCTTTTCTGGTGCAAAGCTAACCAGGACAGAGGEST: gi|58662163|gb|CK050843.1|CK050843
genomic: GGTGTCAATTAGGAAATCACCTCCATGGGCAATTGATTCCTGGGGACTGGgtaagcagag ... ctcattgcagGGTGTTTAATTTATGAGCTCTTTTCTGGTGCAAAGCTAACCAGGACAGAGG
EST: GGTGTCAATTAGGAAATCACCTCCATGGGCAATTGATTCCTGGGGACTGG GGTGTTTAATTTATGAGCTCTTTTCTGGTGCAAAGCTAACCAGGACAGAGGEST: gi|88397102|gb|CI593314.1|CI593314
genomic: GGTGTCAATTAGGAAATCACCTCCATGGGCAATTGATTCCTGGGGACTGGgtaagcagag ... ctcattgcagGGTGTTTAATTTATGAGCTCTTTTCTGGTGCAAAGCTAACCAGGACAGAGG
EST: GGTGTCAATTAGGAAATCACCTCCATGGGCAATTGATTCCTGGGGACTGG GGTGTTTAATTTATGAGCTCTTTTCTGGTGCAAAGATAACCAGGACAGAGGEST: gi|29622867|gb|CB627878.1|CB627878
genomic: GGTGTCAATTAGGAAATCACCTCCATGGGCAATTGATTCCTGGGGACTGGgtaagcagag ... ctcattgcagGGTGTTTAATTTATGAGCTCTTTTCTGGTGCAAAGCTAACCAGGACAGAGG
EST: GTGTCAATTAGGAAATCACCTCCATGGGGCA-TTGATTCCTGGGGACTGG GGTGGTTTAATTTATGAGCTCTTTTCTGGTGCAAAGCTAACCEST: gi|58684299|gb|CK072986.1|CK072986
genomic: GTGTCAATTAGGAAATCACCTCCATGGG-CAATTGATTCCTGGGGACTGGgtaagcagag ... ctcattgcagGGTG-TTTAATTTATGAGCTCTTTTCTGGTGCAAAGCTAACC
EST: GGTGTCAATTAGGAAATCACCTCCATGGGCAATTGATTCCTGGGGACTGG GGTGTTTAATTTATGAGCTCTTTTCTGGTGCAAAGCTAACCAGGACAGAGGEST: gi|29623070|gb|CB628081.1|CB628081
genomic: GGTGTCAATTAGGAAATCACCTCCATGGGCAATTGATTCCTGGGGACTGGgtaagcagag ... ctcattgcagGGTGTTTAATTTATGAGCTCTTTTCTGGTGCAAAGCTAACCAGGACAGAGG
EST: GGTGTCAATTAGGAAATCACCTCCATGGGCAATTGATTCCTGNGGACTGG GGTGTTTAATTTATGAGCTCTTTTCTGGTGCAAAGCTAACCAGGACAGAGG
genomic: GGTGTCAATTAGGAAATCACCTCCATGGGCAATTGATTCCTGGGGACTGGgtaagcagag ... ctcattgcagGGTGTTTAATTTATGAGCTCTTTTCTGGTGCAAAGCTAACCAGGACAGAGG
taaaaatggtttttagactcatctccaaaaatattgatctctggactcattgcagGGTGTTTAATTTATGAGCTCTTTTCTGGTGCAAAGCTAACCAGGACAGAGGACCTTCGGAACACTGCTTCAATCCCAAAG
tattgat putative branch site (score: 22)
aaaaatattgatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acattcaaggagcacctgaaagtttcttatagcagtatttaacagtaaaaatggtttttagactcatctccaaaaatattgatctctggactcattgcagGGTGTTTAATTTATGAGCTCTTTTCTGGTGCAAAGCTAACCAGGACAGAGGACCTTCGGAACACTGCTTCAATCCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
-cattcaa
- - - - - -gcacctg
- - - - - - - - - - - - - - - - - - - - - -agtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata