1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attgtggagtttatagttgtctattgtgcttatataaaataatattctgtcttagtccatttgtatttatgctgtaactcattgatttgtttttttacagTGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATCTGGATACTTTGATGAAACTAAGGAAGAGTACGTTGAAATTCCTAGTGAT
species | Oryza sativa |
transcript | LOC_Os01g60190.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAG TGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATCEST: gi|9788888|gb|BE530898.1|BE530898
genomic: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAGgcaagtacct ... ttttttacagTGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATC
EST: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAG TGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATCEST: gi|163921118|gb|EG710144.1|EG710144
genomic: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAGgcaagtacct ... ttttttacagTGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATC
EST: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAG TGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATCEST: gi|38476992|gb|CF961125.1|CF961125
genomic: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAGgcaagtacct ... ttttttacagTGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATC
EST: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAG TGAGACAGTGAAGTTTGGCCATGTCACATTEST: gi|38479186|gb|CF963319.1|CF963319
genomic: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAGgcaagtacct ... ttttttacagTGAGACAGTGAAGTTTGGCCATGTCACATT
EST: CATCTGGTGAATACTTGGTAAAGAATGGCGT-CGCACCTTGGGGTTGCAG TGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATEST: gi|33678746|gb|CF306985.1|CF306985
genomic: CATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTT-CGCTTGCAGgcaagtacct ... ttttttacagTGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGAT
EST: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAG TGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATCEST: gi|33679927|gb|CF308166.1|CF308166
genomic: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAGgcaagtacct ... ttttttacagTGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATC
EST: AAGAATGGCGTCCGCACCTTCGCTTGCAG TGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATCEST: gi|157650077|gb|EX449711.1|EX449711
genomic: AAGAATGGCGTCCGCACCTTCGCTTGCAGgcaagtacct ... ttttttacagTGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATC
EST: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAG TGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATCEST: gi|29687456|gb|CB683731.1|CB683731
genomic: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAGgcaagtacct ... ttttttacagTGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATC
EST: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAG TGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATCEST: gi|29616025|gb|CB621037.1|CB621037
genomic: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAGgcaagtacct ... ttttttacagTGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATC
EST: ACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAG TGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATCEST: gi|58695777|gb|CK084464.1|CK084464
genomic: ACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAGgcaagtacct ... ttttttacagTGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATC
EST: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAG TGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATCEST: gi|29687056|gb|CB683331.1|CB683331
genomic: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAGgcaagtacct ... ttttttacagTGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATC
EST: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAG TGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATCEST: gi|27577152|gb|CA999846.1|CA999846
genomic: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAGgcaagtacct ... ttttttacagTGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATC
EST: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAG TGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATCEST: gi|29679426|gb|CB675701.1|CB675701
genomic: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAGgcaagtacct ... ttttttacagTGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATC
EST: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAG TGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAAACG-AAACCGAT
genomic: ACATCTGGTGAATACTTGGTAAAGAATGGCGTCCGCACCTTCGCTTGCAGgcaagtacct ... ttttttacagTGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAA-CGGAAACCGAT
tctgtcttagtccatttgtatttatgctgtaactcattgatttgtttttttacagTGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATCTGGATACTTTGATGAAACTAAGGAAGAGTACGTTGAAATTCCTAGTGAT
tttgttttttt CT-rich tract
attgatttgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtggagtttatagttgtctattgtgcttatataaaataatattctgtcttagtccatttgtatttatgctgtaactcattgatttgtttttttacagTGAGACAGTGAAGTTTGGCCATGTCACATTTTTCTGGAACGGAAACCGATCTGGATACTTTGATGAAACTAAGGAAGAGTACGTTGAAATTCCTAGTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA