1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtacggagcatgtatagctttactactgatactctgcttagagtagtactagtaccttaatcttgagctgctgacatagacttattttctctgattgcagCACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAGTCCATGATCAGTCTGCTCCAGTCTACATAACCATCGGAGATGGAGGAA
species | Oryza sativa |
transcript | LOC_Os01g56880.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACA CACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAEST: gi|33793731|gb|CF322748.1|CF322748
genomic: ACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACAgtaagcactt ... ctgattgcagCACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCA
EST: ACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACA CACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAEST: gi|58689762|gb|CK078449.1|CK078449
genomic: ACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACAgtaagcactt ... ctgattgcagCACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCA
EST: GTTCATGCCTATGAACGGACA CACAGGATATCAAATGTTCGCGTACAACATTGTGAATGGCCAGTGCACTCCEST: gi|86414531|gb|CI068934.1|CI068934
genomic: GTTCATGCCTATGAACGGACAgtaagcactt ... ctgattgcagCACAGGATATCAAATG-TCGCGTACAACATTGTGAATGGCCAGTGCACTCC
EST: ACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACA CACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAEST: gi|87032680|gb|CI270315.1|CI270315
genomic: ACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACAgtaagcactt ... ctgattgcagCACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCA
EST: ACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACA CACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAEST: gi|89185974|gb|CI047843.1|CI047843
genomic: ACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACAgtaagcactt ... ctgattgcagCACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCA
EST: ACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACA CACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAEST: gi|14981796|gb|BI306474.1|BI306474
genomic: ACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACAgtaagcactt ... ctgattgcagCACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCA
EST: CGTGTTTGCAGGACATGTTCATGCCTATGAACGGACA CACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCA
genomic: CGTGTTTGCAGGACATGTTCATGCCTATGAACGGACAgtaagcactt ... ctgattgcagCACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCA
gtactagtaccttaatcttgagctgctgacatagacttattttctctgattgcagCACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAGTCCATGATCAGTCTGCTCCAGTCTACATAACCATCGGAGATGGAGGAA
cttattttctct CT-rich tract
acttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggagcatgtatagctttactactgatactctgcttagagtagtactagtaccttaatcttgagctgctgacatagacttattttctctgattgcagCACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAGTCCATGATCAGTCTGCTCCAGTCTACATAACCATCGGAGATGGAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - -gcatgta
- - - - - - - - - - - - -ctgatac
- - - - - - - - - - - - - - - - -ctgctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgac