1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tccataatcataagttactacagtccacttaaacttctatttaactattggtgtgctttaacatcatgatgcatacatgacatttcaactcttggagcagGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAACCAATCAATCGTTAGAAAGATCACCTCCAGGGCTCCAGTCCTATGGCC
species | Oryza sativa |
transcript | LOC_Os01g56820.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGCAGGAAGTTGGCAAG GATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAEST: gi|88260325|gb|CI362618.1|CI362618
genomic: CAGCAGGAAGTTGGCAAGgtaacatctc ... cttggagcagGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCA
EST: TACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAG GATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAEST: gi|89177839|gb|CI391018.1|CI391018
genomic: TACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGgtaacatctc ... cttggagcagGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCA
EST: CAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGGCAAG GATTGTTACCCCCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGGTGEST: gi|88413765|gb|CI528537.1|CI528537
genomic: CAACTGTGGTTAGACAATACCTACAGCAGGAAGTT-GGCAAGgtaacatctc ... cttggagcagGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAA-GGTG
EST: TACAGCAAGCAACTGTGGTTAGACAATACCTACGGCAGGAAGTTGGCAAG GATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAEST: gi|58695745|gb|CK084432.1|CK084432
genomic: TACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGgtaacatctc ... cttggagcagGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCA
EST: TACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAG GATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAEST: gi|88965704|gb|CI006600.1|CI006600
genomic: TACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGgtaacatctc ... cttggagcagGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCA
EST: TACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAG GATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAEST: gi|117234957|gb|CT847981.1|CT847981
genomic: TACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGgtaacatctc ... cttggagcagGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCA
EST: TACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAG GATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAEST: gi|88465467|gb|CI520019.1|CI520019
genomic: TACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGgtaacatctc ... cttggagcagGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCA
EST: TACCTACAGCAGGAAGTTGGCAAG GATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAEST: gi|88215238|gb|CI215087.1|CI215087
genomic: TACCTACAGCAGGAAGTTGGCAAGgtaacatctc ... cttggagcagGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCA
EST: TACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAG GATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAEST: gi|88413879|gb|CI528651.1|CI528651
genomic: TACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGgtaacatctc ... cttggagcagGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCA
EST: TACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAG GATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCA
genomic: TACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGgtaacatctc ... cttggagcagGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCA
tattggtgtgctttaacatcatgatgcatacatgacatttcaactcttggagcagGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAACCAATCAATCGTTAGAAAGATCACCTCCAGGGCTCCAGTCCTATGGCC
ctttaac putative branch site (score: 3)
ctctt putative PPT
tttaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccataatcataagttactacagtccacttaaacttctatttaactattggtgtgctttaacatcatgatgcatacatgacatttcaactcttggagcagGATTCTTACCCGCCATTTTCTTTGAAGGCCTTTCTGAACAAGTAAGGTGCAACCAATCAATCGTTAGAAAGATCACCTCCAGGGCTCCAGTCCTATGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - gtgcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatac