1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtattgtttattttatctttttattttccaactatatgtgggcatgaaagaatttcggtcttcttttcctcagATATATGAAAAGATGATTTCCGGCATGTATCTTGGAGAGATTGTGCGCAGAATCTTGCTTAAGCTTGCTCATGATGCTTCCTTGTTTGGAGATGTTGTTC
species | Oryza sativa |
transcript | LOC_Os01g53930.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGATTACGATAATGCCTTGGACTTTGAAAGTTTAAACCCAGGCGAGCAG ATATATGAAAAGATGATTTCCGGCATGTATCTTGGAGAGATTGTGCGCAGAEST: gi|58603916|gb|CK014444.1|CK014444
genomic: CAGATTACGATAATGCCTTGGACTTTGAAAGTTTAAACCCAGGCGAGCAGgtattgttta ... ttttcctcagATATATGAAAAGATGATTTCCGGCATGTATCTTGGAGAGATTGTGCGCAGA
EST: CAGATTACGATAATGCCTTGGACTTTGAAAGTTTAAACCCAGGCGAGCAG ATATATGAAAAGATGATTTCCGGCATGTATCTTGGAGAGATTGTGCGCAGAEST: gi|58655755|gb|CK044435.1|CK044435
genomic: CAGATTACGATAATGCCTTGGACTTTGAAAGTTTAAACCCAGGCGAGCAGgtattgttta ... ttttcctcagATATATGAAAAGATGATTTCCGGCATGTATCTTGGAGAGATTGTGCGCAGA
EST: CAGATTACGATAATGCCTTGGACTTTGAAAGTTTAAACCCAGGCGAGCAG ATATATGAAAAGATGATTTCCGGCATGTATCTTGGAGAGATTGTGCGCAGAEST: gi|218495539|gb|FG950460.1|FG950460
genomic: CAGATTACGATAATGCCTTGGACTTTGAAAGTTTAAACCCAGGCGAGCAGgtattgttta ... ttttcctcagATATATGAAAAGATGATTTCCGGCATGTATCTTGGAGAGATTGTGCGCAGA
EST: CAGATTACGATAATGCCTTGGACTTTGAAAGTTTAAACCCAGGCGAGCAG ATATATGAAAAGATGATTTCCGGCATGTATCTTGGAGAGATTGTGCGCAGA
genomic: CAGATTACGATAATGCCTTGGACTTTGAAAGTTTAAACCCAGGCGAGCAGgtattgttta ... ttttcctcagATATATGAAAAGATGATTTCCGGCATGTATCTTGGAGAGATTGTGCGCAGA
ttttattttccaactatatgtgggcatgaaagaatttcggtcttcttttcctcagATATATGAAAAGATGATTTCCGGCATGTATCTTGGAGAGATTGTGCGCAGAATCTTGCTTAAGCTTGCTCATGATGCTTCCTTGTTTGGAGATGTTGTTC
tttcggtcttcttttc CT-rich tract
aaagaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtttattttatctttttattttccaactatatgtgggcatgaaagaatttcggtcttcttttcctcagATATATGAAAAGATGATTTCCGGCATGTATCTTGGAGAGATTGTGCGCAGAATCTTGCTTAAGCTTGCTCATGATGCTTCCTTGTTTGGAGATGTTGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG