1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagacaagctagaccacttaaagtcgtgtccaaatctttggtgtagccataaaaaaattagctttcgctaaatttgaatgaagatagctacacttttatgttagtctcatattctttactatttttttcctattctccagATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGAAATGCTGGGATCTTATTAACCATTCGGAATGAATGTGTGCACTCAAGCC
species | Oryza sativa |
transcript | LOC_Os01g53880.7 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTG ATTGGAGCTACTGCTAGGGTCTAGCNGTCTAGGAGAGTCACCAATTGCTGAEST: gi|15857837|gb|BI810649.1|BI810649
genomic: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTGgtaagacaag ... tattctccagATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGA
EST: TGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTG ATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCA-TTGCTGAEST: gi|86254278|gb|CI059005.1|CI059005
genomic: TGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTGgtaagacaag ... tattctccagATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGA
EST: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTG ATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGAEST: gi|33655777|gb|CF278391.1|CF278391
genomic: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTGgtaagacaag ... tattctccagATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGA
EST: AAGGAGTTCAGAGCTTTCCCATACCCTG ATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGAEST: gi|86431162|gb|CI083585.1|CI083585
genomic: AAGGAGTTCAGAGCTTTCCCATACCCTGgtaagacaag ... tattctccagATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGA
EST: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTG ATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGAEST: gi|88269311|gb|CI380609.1|CI380609
genomic: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTGgtaagacaag ... tattctccagATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGA
EST: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTG ATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAAATTGCTGEST: gi|4714720|gb|AU055837.1|AU055837
genomic: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTGgtaagacaag ... tattctccagATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACC-AATTGCTG
EST: CTGCTAAAAGGCTGAGGGTTCTAAGGCGTTCAGAGCTTTCCCATACCCTG ATTGGAGCTACTGCTNGGGTCTAGCCGTCTAGGAGAGTCNCCAATTGCTGAEST: gi|88908179|gb|CI090774.1|CI090774
genomic: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTGgtaagacaag ... tattctccagATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGA
EST: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTG ATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGAEST: gi|88227853|gb|CI227333.1|CI227333
genomic: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTGgtaagacaag ... tattctccagATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGA
EST: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTG ATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGAEST: gi|88271388|gb|CI387441.1|CI387441
genomic: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTGgtaagacaag ... tattctccagATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGA
EST: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTG ATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGAEST: gi|88274057|gb|CI394463.1|CI394463
genomic: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTGgtaagacaag ... tattctccagATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGA
EST: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTG AGTTGGAGCTACTGGTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGEST: gi|25798457|gb|CA754418.1|CA754418
genomic: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTGgtaagacaag ... tattctccagA-TTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTG
EST: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTG ATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGAEST: gi|13420516|gb|AU174606.1|AU174606
genomic: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTGgtaagacaag ... tattctccagATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGA
EST: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTG ATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGAEST: gi|33655773|gb|CF278387.1|CF278387
genomic: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTGgtaagacaag ... tattctccagATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGA
EST: AAGGAGTTCAGAGCTTTCCCATACCCTG ATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGAEST: gi|58696125|gb|CK084812.1|CK084812
genomic: AAGGAGTTCAGAGCTTTCCCATACCCTGgtaagacaag ... tattctccagATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGA
EST: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTG ATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGAEST: gi|86884571|gb|CI312950.1|CI312950
genomic: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTGgtaagacaag ... tattctccagATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGA
EST: CTGCTAAAAGGCTGA-GGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTG ATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGAEST: gi|18387819|gb|BM421017.1|BM421017
genomic: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTGgtaagacaag ... tattctccagATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGA
EST: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTG ATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGAEST: gi|88289513|gb|CI555875.1|CI555875
genomic: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTGgtaagacaag ... tattctccagATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGA
EST: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTG ATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGA
genomic: CTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTGgtaagacaag ... tattctccagATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGA
agctacacttttatgttagtctcatattctttactatttttttcctattctccagATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGAAATGCTGGGATCTTATTAACCATTCGGAATGAATGTGTGCACTCAAGCC
tctcatattctttact CT-rich tract
tcatattctttactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacaagctagaccacttaaagtcgtgtccaaatctttggtgtagccataaaaaaattagctttcgctaaatttgaatgaagatagctacacttttatgttagtctcatattctttactatttttttcctattctccagATTGGAGCTACTGCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGAAATGCTGGGATCTTATTAACCATTCGGAATGAATGTGTGCACTCAAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG