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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaagccatagctattcttcagaaacatttcttggcgtgaaaagaaagggaaaaaagccagcactgtgctatcagttctaacagaatttttttttcttgaacgattagATACGCGTCGATGCGTGCGATAGAGAGCCCTTCTACCCTGGATGATCAGCAATGGCTCACCTACTGGGTCCTCTACTCCCTGATCACCCTCTTTGAGCTC

Basic information

species Oryza sativa
transcript LOC_Os01g52780.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27547045|gb|CA765092.2|CA765092
EST:     GCCAGGAATCATGCTGCTCTACCCTCT                         ATACGCGTCGATGCGTGCGATAGAGAGCCCTTCTACCCTGGATGATCAGCA
genomic: GCCAGGAATCATGCTGCTCTACCCTCTgtaagtgaag ... gaacgattagATACGCGTCGATGCGTGCGATAGAGAGCCCTTCTACCCTGGATGATCAGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagccagcactgtgctatcagttctaacagaatttttttttcttgaacgattagATACGCGTCGATGCGTGCGATAGAGAGCCCTTCTACCCTGGATGATCAGCAATGGCTCACCTACTGGGTCCTCTACTCCCTGATCACCCTCTTTGAGCTC
                      ttctaac  putative branch site (score: 1)
                                 tttttttttcttg  putative PPT
                         taacagaatttttttt  TA-rich tract