1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgggtgattatttaccatgataatcttcatccattttcttggtcaagaacccatctgtgtattgatggaattcattgtttcagGATTGCACCCATACTGCAGGGGCTGTTGTTGTCCATCAATTTTGTCATATTGGGTCATTTTCATTTCTAGGTGGAGGCTCTGTG
species | Oryza sativa |
transcript | LOC_Os01g52400.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATAACATATTTGCTAACAATACTCTATTTGCTGGCCATGTTGTTGTTGAA GATTGCACCCATACTGCAGGGGCTGTTGTTGTCCATCAATTTTGTCATATTEST: gi|86900249|gb|CI296292.1|CI296292
genomic: ATAACATATTTGCTAACAATACTCTATTTGCTGGCCATGTTGTTGTTGAAgtgggtgatt ... attgtttcagGATTGCACCCATACTGCAGGGGCTGTTGTTGTCCATCAATTTTGTCATATT
EST: ATAACATATTTGCTAACAATACTCTATTTGCTGGCCATGTTGTTGTTGAA GATTGCACCCATACTGCAGGGGCTGTTGTTGTCCATCAATTTTGTCATATT
genomic: ATAACATATTTGCTAACAATACTCTATTTGCTGGCCATGTTGTTGTTGAAgtgggtgatt ... attgtttcagGATTGCACCCATACTGCAGGGGCTGTTGTTGTCCATCAATTTTGTCATATT
atccattttcttggtcaagaacccatctgtgtattgatggaattcattgtttcagGATTGCACCCATACTGCAGGGGCTGTTGTTGTCCATCAATTTTGTCATATTGGGTCATTTTCATTTCTAGGTGGAGGCTCTGTG
tattgat putative branch site (score: 3)
ttgtttc putative PPT
aattcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtgattatttaccatgataatcttcatccattttcttggtcaagaacccatctgtgtattgatggaattcattgtttcagGATTGCACCCATACTGCAGGGGCTGTTGTTGTCCATCAATTTTGTCATATTGGGTCATTTTCATTTCTAGGTGGAGGCTCTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG