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gtaggatttaccattctcctatggattttttccatctttaaactctcacttcggtaatctgcgaatagttgtcatcactagcaataatatttttctttatccaagGTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGATGTTAAGAACATTCTTGTGGAAATGGGGACATACTTCCAAGTTCAG
species | Oryza sativa |
transcript | LOC_Os01g50760.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCG GTTGCATGTGCTTTGCTGCTATCEST: gi|88690724|gb|CI734803.1|CI734803
genomic: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCGgtaggattta ... tttatccaagGTTGCATGTGCTTTGCTGCTATC
EST: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCG GTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGATEST: gi|27577652|gb|CB000347.1|CB000347
genomic: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCGgtaggattta ... tttatccaagGTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGAT
EST: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCG GTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGATEST: gi|27576092|gb|CA998786.1|CA998786
genomic: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCGgtaggattta ... tttatccaagGTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGAT
EST: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCG GTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGATEST: gi|29620886|gb|CB625897.1|CB625897
genomic: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCGgtaggattta ... tttatccaagGTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGAT
EST: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCG GTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGATEST: gi|27576091|gb|CA998785.1|CA998785
genomic: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCGgtaggattta ... tttatccaagGTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGAT
EST: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCG GTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGATEST: gi|29684521|gb|CB680796.1|CB680796
genomic: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCGgtaggattta ... tttatccaagGTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGAT
EST: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCG GTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGATEST: gi|8856728|gb|AU094046.1|AU094046
genomic: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCGgtaggattta ... tttatccaagGTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGAT
EST: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCG GTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGATEST: gi|29688203|gb|CB684478.1|CB684478
genomic: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCGgtaggattta ... tttatccaagGTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGAT
EST: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCG GTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGATEST: gi|27554346|gb|CA998246.1|CA998246
genomic: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCGgtaggattta ... tttatccaagGTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGAT
EST: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCG GTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGATEST: gi|58681411|gb|CK070098.1|CK070098
genomic: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCGgtaggattta ... tttatccaagGTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGAT
EST: TTACTACTCATTCTATCTTCCG GTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGATEST: gi|86521107|gb|CI161313.1|CI161313
genomic: TTACTACTCATTCTATCTTCCGgtaggattta ... tttatccaagGTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGAT
EST: GCTTACTACTCATTCTATCTTCCG GTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGATEST: gi|29684202|gb|CB680477.1|CB680477
genomic: GCTTACTACTCATTCTATCTTCCGgtaggattta ... tttatccaagGTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGAT
EST: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCG GTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGAT
genomic: ACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCGgtaggattta ... tttatccaagGTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGAT
tcggtaatctgcgaatagttgtcatcactagcaataatatttttctttatccaagGTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGATGTTAAGAACATTCTTGTGGAAATGGGGACATACTTCCAAGTTCAG
tatttttctttatcc CT-rich tract
tagcaataatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggatttaccattctcctatggattttttccatctttaaactctcacttcggtaatctgcgaatagttgtcatcactagcaataatatttttctttatccaagGTTGCATGTGCTTTGCTGCTATCTGGTGAGAATTTGGATAACTTCGGTGATGTTAAGAACATTCTTGTGGAAATGGGGACATACTTCCAAGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC