1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taatagcaagaatcataacaccttggaaaaaaagcatcagtactagaaagcttgttgaaacatctaaatgctataaatcctctctattttcaacttccagGCTGAGTACAATGCCATTTCATATACCCAACAAATGAGGTTGAGGACAGCAGTTGAACTTTTGAAGGCTACAAAGGACATAGAATCCCAGTTGGAGAAG
species | Oryza sativa |
transcript | LOC_Os01g49380.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAAAGATATTGGAGATTTGGCATTTAGAGATCCAAGTAAAAGAAAAGTA GCTGAGTACAATGCCATTTCATATACCCAACAAATGAGGTTGAGGACAGCAEST: gi|27548274|gb|CA767490.2|CA767490
genomic: AAAAAGATATTGGAGATTTGGCATTTAGAGATCCAAGTAAAAGAAAAGTAgtaagtttct ... caacttccagGCTGAGTACAATGCCATTTCATATACCCAACAAATGAGGTTGAGGACAGCA
EST: AAAAAGATATTGGAGATTTGGCATTTAGAGATCCAAGTAAAAGAAAAGTA GCTGAGTACAATGCCATTTCATATACCCAACAAATGAGGTTGAGGACAGCA
genomic: AAAAAGATATTGGAGATTTGGCATTTAGAGATCCAAGTAAAAGAAAAGTAgtaagtttct ... caacttccagGCTGAGTACAATGCCATTTCATATACCCAACAAATGAGGTTGAGGACAGCA
gaaagcttgttgaaacatctaaatgctataaatcctctctattttcaacttccagGCTGAGTACAATGCCATTTCATATACCCAACAAATGAGGTTGAGGACAGCAGTTGAACTTTTGAAGGCTACAAAGGACATAGAATCCCAGTTGGAGAAG
atctaaa putative branch site (score: 3)
tcctctctattttcaa putative PPT
taaatgctataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatagcaagaatcataacaccttggaaaaaaagcatcagtactagaaagcttgttgaaacatctaaatgctataaatcctctctattttcaacttccagGCTGAGTACAATGCCATTTCATATACCCAACAAATGAGGTTGAGGACAGCAGTTGAACTTTTGAAGGCTACAAAGGACATAGAATCCCAGTTGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - agcaaga
- - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - -gcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - cttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgct