1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cgtgaaaatgaccaaatactgttcgctacttgtcatctttgatgaaaaagtactgtgccatatcttctgttgtttgttaacgcctcttttatatcggcagGTTGCTACCGATGTTGACATAGATGAAGTTGCACGGAGGACAGAAGGCTATAGTGGTGACGACCTTACAAATGTTTGCCGTGATGCTTCAATGAATGGCA
species | Oryza sativa |
transcript | LOC_Os01g49000.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTTTGAAAGCAGAAAGGCACTCATCAATATTAACCTTAAAACTGTTGAG GTTGCTACCGATGTTGACATAGATGAAGTTGCACGGAGGACAGAAGGCTATEST: gi|86595060|gb|CI260299.1|CI260299
genomic: ATTTTGAAAGCAGAAAGGCACTCATCAATATTAACCTTAAAACTGTTGAGgtatgatatt ... atatcggcagGTTGCTACCGATGTTGACATAGATGAAGTTGCACGGAGGACAGAAGGCTAT
EST: ATTTTGAAAGCAGAAAGGCACTCATCAATATTAACCTTAAAACTGTTGAG GTTGCTACCGATGTTGACATAGATGAAGTTGCACGGAGGACAGAAGGCTATEST: gi|29625418|gb|CB630429.1|CB630429
genomic: ATTTTGAAAGCAGAAAGGCACTCATCAATATTAACCTTAAAACTGTTGAGgtatgatatt ... atatcggcagGTTGCTACCGATGTTGACATAGATGAAGTTGCACGGAGGACAGAAGGCTAT
EST: ATTTTGAAAGCAGAAAGGCACTCATCAATATTAACCTTAAAACTGTTGAG GTTGCTACCGATGTTGACATAGATGAAGTTGCACGGAGGACAGAAGGCTATEST: gi|29638399|gb|CB643408.1|CB643408
genomic: ATTTTGAAAGCAGAAAGGCACTCATCAATATTAACCTTAAAACTGTTGAGgtatgatatt ... atatcggcagGTTGCTACCGATGTTGACATAGATGAAGTTGCACGGAGGACAGAAGGCTAT
EST: ATTTTGAAAGCAGAAAGGCACTCATCAATATTAACCTTAAAACTGTTGAG GTTGCTACCGATGTTGACATAGATGAAGTTGCACGGAGGACAGAAGGCTATEST: gi|29638398|gb|CB643407.1|CB643407
genomic: ATTTTGAAAGCAGAAAGGCACTCATCAATATTAACCTTAAAACTGTTGAGgtatgatatt ... atatcggcagGTTGCTACCGATGTTGACATAGATGAAGTTGCACGGAGGACAGAAGGCTAT
EST: ATTTTGAAAGCAGAAAGGCACTCATCAATATTAACCTTAAAACTGTTGAG GTTGCTACCGATGTTGACATAGATGAAGTTGCACGGAGGACAGAAGGCTATEST: gi|29659290|gb|CB655565.1|CB655565
genomic: ATTTTGAAAGCAGAAAGGCACTCATCAATATTAACCTTAAAACTGTTGAGgtatgatatt ... atatcggcagGTTGCTACCGATGTTGACATAGATGAAGTTGCACGGAGGACAGAAGGCTAT
EST: ATTTTGAAAGCAGAAAGGCACTCATCAATATTAACCTTAAAACTGTTGAG GTTGCTACCGATGTTGACATAGATGAAGTTGCACGGAGGACAGAAGGCTATEST: gi|86436090|gb|CI117812.1|CI117812
genomic: ATTTTGAAAGCAGAAAGGCACTCATCAATATTAACCTTAAAACTGTTGAGgtatgatatt ... atatcggcagGTTGCTACCGATGTTGACATAGATGAAGTTGCACGGAGGACAGAAGGCTAT
EST: ATTTTGAAAGCAGAAAGGCACTCATCAATATTAACCTTAAAACTGTTGAG GTTGCTACCGATGTTGACATAGATGAAGTTGCACGGAGGACAGAAGGCTAT
genomic: ATTTTGAAAGCAGAAAGGCACTCATCAATATTAACCTTAAAACTGTTGAGgtatgatatt ... atatcggcagGTTGCTACCGATGTTGACATAGATGAAGTTGCACGGAGGACAGAAGGCTAT
aaaagtactgtgccatatcttctgttgtttgttaacgcctcttttatatcggcagGTTGCTACCGATGTTGACATAGATGAAGTTGCACGGAGGACAGAAGGCTATAGTGGTGACGACCTTACAAATGTTTGCCGTGATGCTTCAATGAATGGCA
tgttaac putative branch site (score: 24)
cctcttttat CT-rich tract
tcttttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtgaaaatgaccaaatactgttcgctacttgtcatctttgatgaaaaagtactgtgccatatcttctgttgtttgttaacgcctcttttatatcggcagGTTGCTACCGATGTTGACATAGATGAAGTTGCACGGAGGACAGAAGGCTATAGTGGTGACGACCTTACAAATGTTTGCCGTGATGCTTCAATGAATGGCA
- - - - -gaccaaa
- - - - - - - - tactgtt
- - - - - - - - - - - -cgctact
- - - - - - - - - - - - - - - - - - - -tgatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttgt