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gtaagaagaattagattgatatacattctggtcaataccagttttttatttttataaaacaaattatcagtgcgtgttgatggtaacagttgtgaatgtgaaccattgtagATTCGAGTCTGATTCTTCATCAGAAGAGAACACAAAAGACAATAACAATCTTTCTG
species | Oryza sativa |
transcript | LOC_Os01g48390.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGGGCGATGTGTATCAAAGATCTGAGAATGG ATTCGAGTCTGATTCTTCATCAGAAGAGAACACAAAAGACAATAACAATCTEST: gi|29630495|gb|CB635504.1|CB635504
genomic: GGGGCGATGTGTATCAAAGATCTGAGAATGGgtaagaagaa ... accattgtagATTCGAGTCTGATTCTTCATCAGAAGAGAACACAAAAGACAATAACAATCT
EST: TTTGACGTCTATGATGAGAGGGGCGATGTGGATCAAAGATCTGAGAATGG ATTCGAGTCTGATTCTTCATCAGAAGAGAACACAAAAGACAATAACAATCTEST: gi|29630295|gb|CB635304.1|CB635304
genomic: TTTGACGTCTATGATGAGAGGGGCGATGTGTATCAAAGATCTGAGAATGGgtaagaagaa ... accattgtagATTCGAGTCTGATTCTTCATCAGAAGAGAACACAAAAGACAATAACAATCT
EST: TTTGACGTCTATGATGAGAGGGGCGATGTGGATCAAAGATCTGAGAATGG ATTCGAGTCTGATTCTTCATCAGAAGAGAACACAAAAGACAATAACAATCTEST: gi|58677242|gb|CK065929.1|CK065929
genomic: TTTGACGTCTATGATGAGAGGGGCGATGTGTATCAAAGATCTGAGAATGGgtaagaagaa ... accattgtagATTCGAGTCTGATTCTTCATCAGAAGAGAACACAAAAGACAATAACAATCT
EST: ATCAAAGATCTGAGAATGG ATTCGAGTCTGATTCTTCATCAGAAGAGAACACAAAAGACAATAACAATCT
genomic: ATCAAAGATCTGAGAATGGgtaagaagaa ... accattgtagATTCGAGTCTGATTCTTCATCAGAAGAGAACACAAAAGACAATAACAATCT
aaacaaattatcagtgcgtgttgatggtaacagttgtgaatgtgaaccattgtagATTCGAGTCTGATTCTTCATCAGAAGAGAACACAAAAGACAATAACAATCTTTCTG
tggtaac putative branch site (score: 2)
aattatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaagaattagattgatatacattctggtcaataccagttttttatttttataaaacaaattatcagtgcgtgttgatggtaacagttgtgaatgtgaaccattgtagATTCGAGTCTGATTCTTCATCAGAAGAGAACACAAAAGACAATAACAATCTTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA