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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggttaaaagtcttcagagttacagattttctttttgtctgcttctcttgttggataatgtcttgatgtcagttcctgcctttaataagttgtactcacagGTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTTCAGTCAACCCTTTTCTGTTGGAATGCGATTCAAATTGAGATATGAGAGT

Basic information

species Oryza sativa
transcript LOC_Os01g48060.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33677338|gb|CF305577.1|CF305577
EST:     GCACATGCTGTGGCCGTGAAAAGTATTTTTCACATCTACTACAATCCCAG                         GTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTT
genomic: GCACATGCTGTGGCCGTGAAAAGTATTTTTCACATCTACTACAATCCCAGgtaataaagt ... gtactcacagGTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTT
EST: gi|58665936|gb|CK054622.1|CK054622
EST:     GCACATGCTGTGGCCGTGAAAAGTATTTTTCACATCTACTACAATCCCAG                         GTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTT
genomic: GCACATGCTGTGGCCGTGAAAAGTATTTTTCACATCTACTACAATCCCAGgtaataaagt ... gtactcacagGTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTT
EST: gi|58689818|gb|CK078505.1|CK078505
EST:     GCACATGCTGTGGCCGTGAAAAGTATTTTTCACATCTACTACAATCCCAG                         GTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTT
genomic: GCACATGCTGTGGCCGTGAAAAGTATTTTTCACATCTACTACAATCCCAGgtaataaagt ... gtactcacagGTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgttggataatgtcttgatgtcagttcctgcctttaataagttgtactcacagGTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTTCAGTCAACCCTTTTCTGTTGGAATGCGATTCAAATTGAGATATGAGAGT
                                 ctttaat  putative branch site (score: 4)
                                  tttaataagttgta  TA-rich tract