1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ggttaaaagtcttcagagttacagattttctttttgtctgcttctcttgttggataatgtcttgatgtcagttcctgcctttaataagttgtactcacagGTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTTCAGTCAACCCTTTTCTGTTGGAATGCGATTCAAATTGAGATATGAGAGT
species | Oryza sativa |
transcript | LOC_Os01g48060.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCACATGCTGTGGCCGTGAAAAGTATTTTTCACATCTACTACAATCCCAG GTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTTEST: gi|58665936|gb|CK054622.1|CK054622
genomic: GCACATGCTGTGGCCGTGAAAAGTATTTTTCACATCTACTACAATCCCAGgtaataaagt ... gtactcacagGTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTT
EST: GCACATGCTGTGGCCGTGAAAAGTATTTTTCACATCTACTACAATCCCAG GTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTTEST: gi|58689818|gb|CK078505.1|CK078505
genomic: GCACATGCTGTGGCCGTGAAAAGTATTTTTCACATCTACTACAATCCCAGgtaataaagt ... gtactcacagGTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTT
EST: GCACATGCTGTGGCCGTGAAAAGTATTTTTCACATCTACTACAATCCCAG GTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTT
genomic: GCACATGCTGTGGCCGTGAAAAGTATTTTTCACATCTACTACAATCCCAGgtaataaagt ... gtactcacagGTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTT
cttgttggataatgtcttgatgtcagttcctgcctttaataagttgtactcacagGTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTTCAGTCAACCCTTTTCTGTTGGAATGCGATTCAAATTGAGATATGAGAGT
ctttaat putative branch site (score: 4)
tttaataagttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttaaaagtcttcagagttacagattttctttttgtctgcttctcttgttggataatgtcttgatgtcagttcctgcctttaataagttgtactcacagGTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTTCAGTCAACCCTTTTCTGTTGGAATGCGATTCAAATTGAGATATGAGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctgcc