1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gcctgcctatgttgtcatcctactcaagtagtacatatctgatgtacattgtggattataatccgtttgtaacactaactcttcccatcttattctacagAGCATGGCAAAGTGTTAGATGAGTTCTTCCTCTCTACCGCTG
species | Oryza sativa |
transcript | LOC_Os01g45390.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGGAAATGATACTTCAAGCACTAGAATATGAGAAAG AGCATGGCAAAGTGTTAGATGAGTTCTTCCTCTCTACCGCTGEST: gi|218482062|gb|FG957111.1|FG957111
genomic: GTGGAAATGATACTTCAAGCACTAGAATATGAGAAAGgtattacttt ... tattctacagAGCATGGCAAAGTGTTAGATGAGTTCTTCCTCTCTACCGCTG
EST: GTGGAAATGATACTTCAAGCACTAGAATATGAGAAAG AGCATGGCAAAGTGTTAGATGAGTTCTTCCTCTCTACCGCTGEST: gi|25807682|gb|CA763643.1|CA763643
genomic: GTGGAAATGATACTTCAAGCACTAGAATATGAGAAAGgtattacttt ... tattctacagAGCATGGCAAAGTGTTAGATGAGTTCTTCCTCTCTACCGCTG
EST: GTGGAAATGATACTTCAAGCACTAGAATATGAGAAAG AGCATGGCAAAGTGTTAGATGAGTTCTTCCTCTCTACCGCTG
genomic: GTGGAAATGATACTTCAAGCACTAGAATATGAGAAAGgtattacttt ... tattctacagAGCATGGCAAAGTGTTAGATGAGTTCTTCCTCTCTACCGCTG
acattgtggattataatccgtttgtaacactaactcttcccatcttattctacagAGCATGGCAAAGTGTTAGATGAGTTCTTCCTCTCTACCGCTG
cactaac putative branch site (score: 20)
ctcttcccatcttatt CT-rich tract
attataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcctgcctatgttgtcatcctactcaagtagtacatatctgatgtacattgtggattataatccgtttgtaacactaactcttcccatcttattctacagAGCATGGCAAAGTGTTAGATGAGTTCTTCCTCTCTACCGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
gcctgcc
- - - - atgttgt
- - - - - - - - - - - - - - - - - - - ctgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acactaa