1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtactatgtacacagatatgcttattatttcttagctgcctatttcttgtcgatgtatgttttccaaagttgtaagtaaatcttcatctttttttttcagGTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGATGACCCCTCAGACCAGGAATTGGTCGAGTTACTCCCATTCCTGGAGACAC
species | Oryza sativa |
transcript | LOC_Os01g43870.5 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCTTGGAGTTGACCTGGCAAAAGTTGTAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGATEST: gi|29667801|gb|CB664076.1|CB664076
genomic: TTCTTGGAGTTGACCTGGCAAAAGTTGTAATAGTTGACAATACTCCACAGgtagcatgcc ... tttttttcagGTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGAT
EST: TTCTTGGAGTTGACCTGGCAAAAGTTGTAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGATEST: gi|300216153|gb|HO087938.1|HO087938
genomic: TTCTTGGAGTTGACCTGGCAAAAGTTGTAATAGTTGACAATACTCCACAGgtagcatgcc ... tttttttcagGTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGAT
EST: TTCTTGGAGTTGACCTGGCAAAAGTTGTAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGATEST: gi|23322156|gb|BU572401.1|BU572401
genomic: TTCTTGGAGTTGACCTGGCAAAAGTTGTAATAGTTGACAATACTCCACAGgtagcatgcc ... tttttttcagGTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGAT
EST: TTCTTGGAGTTGACCTGGCAAAAGTTGTAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGATEST: gi|88667374|gb|CI722113.1|CI722113
genomic: TTCTTGGAGTTGACCTGGCAAAAGTTGTAATAGTTGACAATACTCCACAGgtagcatgcc ... tttttttcagGTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGAT
EST: TCTTGGAGTTGACCTGGCAAAAGTTGTAATAGTTGACCAATACTCCACAG GTTTTCCAGTTGCCAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGATEST: gi|87004417|gb|CI298949.1|CI298949
genomic: TCTTGGAGTTGACCTGGCAAAAGTTGTAATAGTTGAC-AATACTCCACAGgtagcatgcc ... tttttttcagGTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGAT
EST: TTCTTGGAGTTGACCTGGCAAAAGTTGTAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGATEST: gi|300215929|gb|HO088555.1|HO088555
genomic: TTCTTGGAGTTGACCTGGCAAAAGTTGTAATAGTTGACAATACTCCACAGgtagcatgcc ... tttttttcagGTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGAT
EST: TTCTTGGAGTTGACCTGGCAAAAGTTGTAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGATEST: gi|88992694|gb|CI035700.1|CI035700
genomic: TTCTTGGAGTTGACCTGGCAAAAGTTGTAATAGTTGACAATACTCCACAGgtagcatgcc ... tttttttcagGTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGAT
EST: TTCTTGGAGTTGACCTGGCAAAAGTTGTAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGATEST: gi|88837692|gb|CI079052.1|CI079052
genomic: TTCTTGGAGTTGACCTGGCAAAAGTTGTAATAGTTGACAATACTCCACAGgtagcatgcc ... tttttttcagGTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGAT
EST: TTCTNGGAGTTGACCTGGCAAAAGTTGTAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGATEST: gi|86846123|gb|CI339752.1|CI339752
genomic: TTCTTGGAGTTGACCTGGCAAAAGTTGTAATAGTTGACAATACTCCACAGgtagcatgcc ... tttttttcagGTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGAT
EST: TTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGAT
genomic: TTGACAATACTCCACAGgtagcatgcc ... tttttttcagGTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGAT
cttgtcgatgtatgttttccaaagttgtaagtaaatcttcatctttttttttcagGTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGATGACCCCTCAGACCAGGAATTGGTCGAGTTACTCCCATTCCTGGAGACAC
tcttcatctttttttt CT-rich tract
taaatcttcatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactatgtacacagatatgcttattatttcttagctgcctatttcttgtcgatgtatgttttccaaagttgtaagtaaatcttcatctttttttttcagGTTTTCCAGTTGCAAGTGGACAATGGTATACCAATAAAGAGCTGGTTTGATGACCCCTCAGACCAGGAATTGGTCGAGTTACTCCCATTCCTGGAGACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA