1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agtcccaagcacggacataagcagcaaagctcgttgtttgtatgctctaatatgccgtgattgatccatcactgagaaacaattcgttacattttctcagGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAACCTCACGGATGATGACCTGAAAGAGATCTCTAGCCAGGTACGCGAAGA
species | Oryza sativa |
transcript | LOC_Os01g43090.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAG GAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAEST: gi|89168390|gb|CI109594.1|CI109594
genomic: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGgtgagtgcta ... attttctcagGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGA
EST: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAG GAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAEST: gi|66916219|gb|CX103067.1|CX103067
genomic: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGgtgagtgcta ... attttctcagGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGA
EST: GCTTTAGCTTGGGTTCTTTCATCAAGGGGATGATGTGGTCCCAATACCAG GAACAACCAAGATAAAAAACCTAGATGCCAACATTGAEST: gi|86538047|gb|CI178253.1|CI178253
genomic: GCTTTAGCTTGGGTTCTT-CATCAAGGGGATGATGTGGTCCCAATACCAGgtgagtgcta ... attttctcagGAACAACCAAGATAAAAAACCTAGATGCCAACATTGA
EST: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAG GAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAEST: gi|88259423|gb|CI363716.1|CI363716
genomic: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGgtgagtgcta ... attttctcagGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGA
EST: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAG GAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAEST: gi|58685243|gb|CK073930.1|CK073930
genomic: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGgtgagtgcta ... attttctcagGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGA
EST: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAG GAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAEST: gi|88281651|gb|CI403047.1|CI403047
genomic: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGgtgagtgcta ... attttctcagGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGA
EST: CTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAG GAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAEST: gi|88204861|gb|CI202712.1|CI202712
genomic: CTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGgtgagtgcta ... attttctcagGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGA
EST: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAG GAACAACCAAGATAATAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAEST: gi|88271340|gb|CI387393.1|CI387393
genomic: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGgtgagtgcta ... attttctcagGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGA
EST: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAG GAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAEST: gi|86839806|gb|CI343719.1|CI343719
genomic: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGgtgagtgcta ... attttctcagGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGA
EST: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATTTGGTCCCAATACCAG GAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAEST: gi|88846089|gb|CI372857.1|CI372857
genomic: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGgtgagtgcta ... attttctcagGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGA
EST: TTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAG GAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAEST: gi|86863542|gb|CI345249.1|CI345249
genomic: TTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGgtgagtgcta ... attttctcagGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGA
EST: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAG GAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAEST: gi|88993684|gb|CI112588.1|CI112588
genomic: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGgtgagtgcta ... attttctcagGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGA
EST: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAG GAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAEST: gi|88225703|gb|CI225619.1|CI225619
genomic: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGgtgagtgcta ... attttctcagGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGA
EST: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAG GAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAEST: gi|58611335|gb|CK039047.1|CK039047
genomic: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGgtgagtgcta ... attttctcagGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGA
EST: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAG GAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAEST: gi|86492326|gb|CI134959.1|CI134959
genomic: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGgtgagtgcta ... attttctcagGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGA
EST: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAG GAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGA
genomic: AGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGgtgagtgcta ... attttctcagGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGA
tctaatatgccgtgattgatccatcactgagaaacaattcgttacattttctcagGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAACCTCACGGATGATGACCTGAAAGAGATCTCTAGCCAGGTACGCGAAGA
cattttctc CT-rich tract
ttacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtcccaagcacggacataagcagcaaagctcgttgtttgtatgctctaatatgccgtgattgatccatcactgagaaacaattcgttacattttctcagGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAACCTCACGGATGATGACCTGAAAGAGATCTCTAGCCAGGTACGCGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - -caagcac
- - - - - - - - - - -cagcaaa
- - - - - - - - - - - - - - - - - - - tgtatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - tgccgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaca