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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttttagcatcttctttattttgtttttttctccctaaatcaattattagtacaaccattttgtcgccgtcggtgtcgatgctgaacgcctgaaccacctgaagtttttgtatgcgctcttgctcaagGATCGGAGGAGCCCGATGGGGCGATGCGGCGACGGCGACGGTTCAGGGCGGCGTGAGCCGTCCGGGACATCGGCGAGATACGATACAGCTTTTGTATAAG

Basic information

species Oryza sativa
transcript LOC_Os01g41730.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86257385|gb|CI007928.1|CI007928
EST:     GCGTCGTCCGCATGCTGGAGGCCGATGATGTTGCGCTATCATCACGGCAG                         GATCGGAGGAGCCCGATGGGGCGATGCGGCGACGGCGACGGTTCAGGGCGG
genomic: GCGTCGTCCGCATGCTGGAGGCCGATGATGTTGCGCTATCATCACGGCAGgtttgttttt ... cttgctcaagGATCGGAGGAGCCCGATGGGGCGATGCGGCGACGGCGACGGTTCAGGGCGG
EST: gi|89180073|gb|CI044352.1|CI044352
EST:     GCGTCGTCCGCATGCTGGAGGCCGATGATGTTGCGCTATCATCACGGCAG                         GATCGGAGGAGCCCGATGGGGCGATGCGGCGACGGCGACGGTTCAGGGCGG
genomic: GCGTCGTCCGCATGCTGGAGGCCGATGATGTTGCGCTATCATCACGGCAGgtttgttttt ... cttgctcaagGATCGGAGGAGCCCGATGGGGCGATGCGGCGACGGCGACGGTTCAGGGCGG
EST: gi|86528880|gb|CI169086.1|CI169086
EST:     GCGTCGTCCGCATGCTGGAGGCCGATGATGTTGCGCTATCATCACGGCAG                         GATCGGAGGAGCCCGATGGGGCGATGCGGCGACGGCGACGGTTCAGGGCGG
genomic: GCGTCGTCCGCATGCTGGAGGCCGATGATGTTGCGCTATCATCACGGCAGgtttgttttt ... cttgctcaagGATCGGAGGAGCCCGATGGGGCGATGCGGCGACGGCGACGGTTCAGGGCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcgatgctgaacgcctgaaccacctgaagtttttgtatgcgctcttgctcaagGATCGGAGGAGCCCGATGGGGCGATGCGGCGACGGCGACGGTTCAGGGCGGCGTGAGCCGTCCGGGACATCGGCGAGATACGATACAGCTTTTGTATAAG
                                           ctcttgctc  CT-rich tract
 tttttgtat  TA-rich tract