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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagctataaaatgaccttctgaatccttgtgcattctaaatgaacatcaaatccttatatcctactactgaacagacaatatgacactatgaatctagttatttagttagtgatagctgaagtgtcatgtgtgaaaactaaaaactctgttggtgtgctactcagGAGAAGAGCCTTCGCATTACGCATAACCTGACAATTTTCGGTGGGTGTGGCTTGGTTCTGTCCATCATCGCCGGATTGTTCGGAATCAATGTTGATGGGA

Basic information

species Oryza sativa
transcript LOC_Os01g41720.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218501298|gb|FG964620.1|FG964620
EST:     TCTTCACCATCCAAGATGTGATGCAGAGCACCCTCCGTGCTTGGTCACAG                         GAGAAGAGCCTTCGCATTACGCATAACCTGACAATTTTCGGTGGGTGTGGC
genomic: TCTTCACCATCCAAGATGTGATGCAGAGCACCCTCCGTGCTTGGTCACAGgtatgagcta ... tgctactcagGAGAAGAGCCTTCGCATTACGCATAACCTGACAATTTTCGGTGGGTGTGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatagctgaagtgtcatgtgtgaaaactaaaaactctgttggtgtgctactcagGAGAAGAGCCTTCGCATTACGCATAACCTGACAATTTTCGGTGGGTGTGGCTTGGTTCTGTCCATCATCGCCGGATTGTTCGGAATCAATGTTGATGGGA
                         aactaaa  putative branch site (score: 2)
                       aaaactaaaaa  TA-rich tract