1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaattcagcaccaaacaacttttgcttgtctcaaaacaaaaggtcttcagggatgatatctgatgaaacatttccaatgcgattttgcagAGATGTTCGGTCGATGACGATGAATTCCCGTCATTCAAGAAGACAGAGGAGAAACCAGAGGAAGCTGAGAAGCCTACTGAACCCACACATGATGAGATCA
species | Oryza sativa |
transcript | LOC_Os01g38980.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTTCATCAGCTTCTTGGAGGAGAACAGTGTTGATCTTGCCGATGTCAAG AGATGTTCGGTCGATGACGATGAATTCCCGTCATTCAAGAAGACAGAGGAGEST: gi|29671489|gb|CB667764.1|CB667764
genomic: AGTTCATCAGCTTCTTGGAGGAGAACAGTGTTGATCTTGCCGATGTCAAGgtaaattcag ... gattttgcagAGATGTTCGGTCGATGACGATGAATTCCCGTCATTCAAGAAGACAGAGGAG
EST: AGTTCATCAGCTTCTTGGAGGAGAACAGTGTTGATCTTGCCGATGTCAAG AGATGTTCGGTCGATGACGATGAATTCCCGTCATTCAAGAAGACAGAGGAGEST: gi|33364621|gb|BP432974.1|BP432974
genomic: AGTTCATCAGCTTCTTGGAGGAGAACAGTGTTGATCTTGCCGATGTCAAGgtaaattcag ... gattttgcagAGATGTTCGGTCGATGACGATGAATTCCCGTCATTCAAGAAGACAGAGGAG
EST: AGTTCATCAGCTTCTTGGAGGAGAACAGTGTTGATCTTGCCGATGTCAAG AGATGTTCGGTCGATGACGATGAATTCCCGTCATTCAAGAAGACAGAGGAG
genomic: AGTTCATCAGCTTCTTGGAGGAGAACAGTGTTGATCTTGCCGATGTCAAGgtaaattcag ... gattttgcagAGATGTTCGGTCGATGACGATGAATTCCCGTCATTCAAGAAGACAGAGGAG
acaaaaggtcttcagggatgatatctgatgaaacatttccaatgcgattttgcagAGATGTTCGGTCGATGACGATGAATTCCCGTCATTCAAGAAGACAGAGGAGAAACCAGAGGAAGCTGAGAAGCCTACTGAACCCACACATGATGAGATCA
atctgat putative branch site (score: 4)
aaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattcagcaccaaacaacttttgcttgtctcaaaacaaaaggtcttcagggatgatatctgatgaaacatttccaatgcgattttgcagAGATGTTCGGTCGATGACGATGAATTCCCGTCATTCAAGAAGACAGAGGAGAAACCAGAGGAAGCTGAGAAGCCTACTGAACCCACACATGATGAGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA