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...gatgagtttgtctacaaggtttaaatgttttgggaaaaactataatttataatgcttggattttttgtactaactttttgtttgatctacacttgagcagACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTATATGCAACAG
species | Oryza sativa |
transcript | LOC_Os01g36930.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAG ACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTATEST: gi|29689095|gb|CB685370.1|CB685370
genomic: GAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAGgtcagcattc ... acttgagcagACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTAT
EST: GAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAG ACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTATEST: gi|58681280|gb|CK069967.1|CK069967
genomic: GAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAGgtcagcattc ... acttgagcagACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTAT
EST: GAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAG ACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTATEST: gi|29679500|gb|CB675775.1|CB675775
genomic: GAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAGgtcagcattc ... acttgagcagACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTAT
EST: GAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAG ACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTATEST: gi|29615418|gb|CB620430.1|CB620430
genomic: GAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAGgtcagcattc ... acttgagcagACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTAT
EST: GAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAG ACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTATEST: gi|29674105|gb|CB670380.1|CB670380
genomic: GAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAGgtcagcattc ... acttgagcagACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTAT
EST: GAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAG ACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTATEST: gi|58601182|gb|CK011710.1|CK011710
genomic: GAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAGgtcagcattc ... acttgagcagACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTAT
EST: GAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAG ACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTATEST: gi|218489926|gb|FG960730.1|FG960730
genomic: GAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAGgtcagcattc ... acttgagcagACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTAT
EST: GAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAG ACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTATEST: gi|3766733|gb|AU030843.1|AU030843
genomic: GAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAGgtcagcattc ... acttgagcagACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTAT
EST: GAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAG ACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTATEST: gi|29615343|gb|CB620355.1|CB620355
genomic: GAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAGgtcagcattc ... acttgagcagACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTAT
EST: GAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAG ACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTAT
genomic: GAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAGgtcagcattc ... acttgagcagACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTAT
tttataatgcttggattttttgtactaactttttgtttgatctacacttgagcagACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTATATGCAACAG
attttttgtactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgagtttgtctacaaggtttaaatgttttgggaaaaactataatttataatgcttggattttttgtactaactttttgtttgatctacacttgagcagACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTATATGCAACAG
- - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - -gaaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - -atgcttg