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...ttagtgctggaaacaatcagtagttatggctgtatgaaatgccatgagatcatttactttagattgaatcattgaactaaatagtttttactgtttttagATGGGATGCAGCACATGCTCGTGCTTTCAAGTTACAAGAGAACAATGATGCCTATAT
species | Oryza sativa |
transcript | LOC_Os01g35920.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
gagatcatttactttagattgaatcattgaactaaatagtttttactgtttttagATGGGATGCAGCACATGCTCGTGCTTTCAAGTTACAAGAGAACAATGATGCCTATAT
aactaaa putative branch site (score: 2)
tttttactgttttt putative PPT
taaatagtttttactg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagtgctggaaacaatcagtagttatggctgtatgaaatgccatgagatcatttactttagattgaatcattgaactaaatagtttttactgtttttagATGGGATGCAGCACATGCTCGTGCTTTCAAGTTACAAGAGAACAATGATGCCTATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- -gtgctgg
- - - - - - acaatca
- - - - - - - - - - - - - - -ctgtatg
- - - - - - - - - - - - - - - - - - - - gccatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaactaa